View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0752_high_1 (Length: 502)
Name: NF0752_high_1
Description: NF0752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0752_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 30 - 491
Target Start/End: Complemental strand, 40772305 - 40771849
Alignment:
| Q |
30 |
gtctcttacataaacctttgaggccattggagtggtgaccaaacagcttggcttgctgtaagcaaaaacaacaatttcatctctatttaagtgtgatcac |
129 |
Q |
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| T |
40772305 |
gtctcttacataaacctttgaggccattggagtggtgaccaaacagcttggcttgctgtaagcaaaaacaacaatttcatctctatttaagtgtgatcac |
40772206 |
T |
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| Q |
130 |
aaacatattctaagtttaatagaaattctaaagctgtaaccctagagatacattatggaagaatcgaaaaacaaacaattagagttagttgacaccctaa |
229 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40772205 |
aaacatattctaagtttaatagaaattctaatgctgtaaccctagaaatacattatggaagaatcgaaaaacaaacaattagagttagttgacaccctaa |
40772106 |
T |
|
| Q |
230 |
ctccactacctcaatctgaatctgaacctcgagagttttcctacttccttgaagaaaaggaaccggggaatgaaggaacttcaagcagtgttgttaaaca |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40772105 |
ctccactacctcaatctgaatctgaacctcgagagttttcctacttccttgaagaaaaggaaccggggaacgaaggaacttcaagcagtgttgttaaaca |
40772006 |
T |
|
| Q |
330 |
agagcgtgtcgtgagtgatcatgctacttcttcagttgatcaaagtatgtattacacatatcacaacaattacattcatcatatacgnnnnnnnnnnnnn |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40772005 |
agagcgtgtcgtgagtgatcatgctacttcttcagttgatcaaagtatgtattacacatatcacaacaattacattcatcatatacg-----tttttttt |
40771911 |
T |
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| Q |
430 |
nnnnaaatgacaaaatcaaaatgacaatagttgaatctcataattgcattcatcatattcat |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40771910 |
ttttaaatgacaaaatcaaaatgacaatagttgaatctcataattgcattcatcatattcat |
40771849 |
T |
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