View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0752_high_5 (Length: 313)
Name: NF0752_high_5
Description: NF0752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0752_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 30 - 302
Target Start/End: Complemental strand, 10546660 - 10546388
Alignment:
| Q |
30 |
aaatccacaaccagtttttcctatacatgaactttccatcatagattggctattcaaagattcccaagaacctttcttgaaagaaccacattgaccttgt |
129 |
Q |
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| T |
10546660 |
aaatccacaaccagtttttcctatacatgaagtttccatcatagattggctattcaaagattcccaagaacctttcttgaaagaaccacattgaccttgt |
10546561 |
T |
|
| Q |
130 |
ggatttccaaaactagcaaaattgattgaagtaattacttgtccattttggcatgatagttctaattttccaccttcatatacattagcacaaatagttt |
229 |
Q |
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| T |
10546560 |
ggatttccaaaactagcaaaattgattgaagtaattacttgtccattttggcatgatagttctaattttccaccttcatatacattagcacaaatagttt |
10546461 |
T |
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| Q |
230 |
ttgttgtctcagttaggaaggaaacattttgaggatttccacctatttcttcaaataaaatcaatgtgttcat |
302 |
Q |
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| T |
10546460 |
ttgttgtctcagttaggaaggaaacattttgaggatttccacctatttcttcaaataaaatcaatgtgttcat |
10546388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 100 - 302
Target Start/End: Complemental strand, 9644653 - 9644451
Alignment:
| Q |
100 |
cctttcttgaaagaaccacattgaccttgtggatttccaaaactagcaaaattgattgaagtaattacttgtccattttggcatgatagttctaattttc |
199 |
Q |
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|||||||| ||||||||||| ||||||| |||||||||| | ||||| || | ||| | |||||||||||| |||| ||||||||||| || | | |
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| T |
9644653 |
cctttcttaaaagaaccacactgaccttctggatttccatagctagcgaattgaatttgtgacattacttgtccactttgacatgatagttcaaactgtg |
9644554 |
T |
|
| Q |
200 |
caccttcatatacattagcacaaatagtttttgttgtctcagttaggaaggaaacattttgaggatttccacctatttcttcaaataaaatcaatgtgtt |
299 |
Q |
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||||||||||||||||||||||||||||| ||||||| ||||| |||| |||| |||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
9644553 |
caccttcatatacattagcacaaatagttcctgttgtcacagtttggaattgaacactttgaggatttccaccaatttcttcaaataaaaccaatgtgtt |
9644454 |
T |
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| Q |
300 |
cat |
302 |
Q |
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||| |
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| T |
9644453 |
cat |
9644451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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