View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0752_high_7 (Length: 293)
Name: NF0752_high_7
Description: NF0752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0752_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 30654067 - 30654146
Alignment:
| Q |
140 |
gatggcttcttgcgagtctatgctgagattttcgatacaattatgtctagtttttctgcatctgctttggaatctcgact |
219 |
Q |
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| T |
30654067 |
gatggcttgttgggagtctatgctgagattttcgatacaattctgtctagtttttctgcctctgctgcgcaatctcgact |
30654146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 10868751 - 10868817
Alignment:
| Q |
17 |
tgtagggatgatatatatgtagtataatccagcttcaattttgtgagttatgtgattagaactataa |
83 |
Q |
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| T |
10868751 |
tgtagggctggtatatatgcaatataatccagcttcagttttgtgagttatgtgattagaactataa |
10868817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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