View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0752_low_1 (Length: 702)
Name: NF0752_low_1
Description: NF0752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0752_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 101 - 554
Target Start/End: Original strand, 44915187 - 44915639
Alignment:
| Q |
101 |
atttgcttctagtcagcaaggtatgaggttagtcgccaaggcacaacaatttgatacggaaagaatagacggtgcagggataaagggcaatttagaccca |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
44915187 |
atttgcttctagtcagcaaggcatgaggttagtcgccaaggcacaacaatttgatacagaaagaatagatggtgcagggataaagtgcaatttagaccca |
44915286 |
T |
|
| Q |
201 |
caacaagtacggcttcaacaaagaatggcacaacatgcatccatgagacctaatttcccacagacaacctcgaatagtcctcagttatctaatgggatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44915287 |
caacaagtacggcttcaacaaagaatggcacaacatgcatccatgagacctaatttcccacagacaacctcgaatagtcctcagttatctaatgggatat |
44915386 |
T |
|
| Q |
301 |
tacctcactcgctaatgctattatcttcaaaatctggtggattttctaagggttcagttggactaaagttttagaccgtcttcaatgaaaaatgcatctg |
400 |
Q |
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| T |
44915387 |
tacctcactcgctaatgctattatcttcaaaatctggtgaattttctaagggttcagttggact-aagttctagaccgtcttcaatgaaaaatgcatctg |
44915485 |
T |
|
| Q |
401 |
gagcattacagaaaaagaaggttgcaacttattcaataaaaaagaaagaagagaagactgcaatggcttcacatacagctgctgttggaactccatctac |
500 |
Q |
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| T |
44915486 |
gagcattacagaaaaagaaggatgcaacttattcaagaaaaaagaaagaagagaagactgcaatggcttcacatacagctgctgttggaactccatctac |
44915585 |
T |
|
| Q |
501 |
aaaggcaacaacagacacacctagctgcaaaatggataatctaattcccttccc |
554 |
Q |
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| T |
44915586 |
aaaggcaacaacagacacacctagctgcaaaatggataatctaattcccttccc |
44915639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 187 - 279
Target Start/End: Original strand, 7749019 - 7749111
Alignment:
| Q |
187 |
gcaatttagacccacaacaagtacggcttcaacaaagaatggcacaacatgcatccatgagacctaatttcccacagacaacctcgaatagtc |
279 |
Q |
| |
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| T |
7749019 |
gcaatttagacccacaacaattacggcttcagcaaagaatgccacaacatgcattcatgagatctaatttcccacagacaacctggaatagtc |
7749111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 101 - 184
Target Start/End: Original strand, 7748903 - 7748986
Alignment:
| Q |
101 |
atttgcttctagtcagcaaggtatgaggttagtcgccaaggcacaacaatttgatacggaaagaatagacggtgcagggataaa |
184 |
Q |
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|||||||||| |||||||||| ||||||||||| ||||||| | |||||||||| | |||||||||||| |||||||||||||| |
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| T |
7748903 |
atttgcttctggtcagcaaggcatgaggttagttgccaaggaagaacaatttgaaatggaaagaatagatggtgcagggataaa |
7748986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 276 - 421
Target Start/End: Original strand, 7749177 - 7749315
Alignment:
| Q |
276 |
agtcctcagttatctaatgggatattacctcactcgctaatgctattatcttcaaaatctggtggattttctaagggttcagttggactaaagttttaga |
375 |
Q |
| |
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||||||| |||||||| ||||| ||||||||||||| | |||||||||||||| |||| ||||||||| ||||||||||||| |||||| || |
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| T |
7749177 |
agtcctcggttatctagtgggacgttacctcactcgcca------ttatcttcaaaatcaggtgaattttctaacggttcagttggac-ccagttttgga |
7749269 |
T |
|
| Q |
376 |
ccgtcttcaatgaaaaatgcatctggagcattacagaaaaagaagg |
421 |
Q |
| |
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|| ||||||||||| | ||| | |||||||| |||||| |||||| |
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| T |
7749270 |
ccatcttcaatgaacaccgcacccggagcattgcagaaagagaagg |
7749315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 449 - 554
Target Start/End: Original strand, 7749307 - 7749422
Alignment:
| Q |
449 |
aagagaagactgcaatggcttcacatacagctgctgttggaactccatcta-----------caaaggcaacaacagacacacctagctgcaaaatggat |
537 |
Q |
| |
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|||||||| | ||||||||||||| ||| |||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| ||| |
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| T |
7749307 |
aagagaaggcagcaatggcttcacttactgctgctgttggaactccatcaaatgattctacacaaaggcaacaacaggcacacctagctgcaaaacgga- |
7749405 |
T |
|
| Q |
538 |
aatctaattcccttccc |
554 |
Q |
| |
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|||||||||||||||| |
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| T |
7749406 |
gatctaattcccttccc |
7749422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 1e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 549 - 673
Target Start/End: Complemental strand, 10194054 - 10193930
Alignment:
| Q |
549 |
cttccctagatctgttacaattcctcaagttccctcactgcttacttttattgacttatttccatcgtatatgtaactaacacctaactgtcaccaacaa |
648 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
10194054 |
cttccctagatctgttacaattcctcaagttccctcactgcttacttttattgacttatttccatcatatatgtaactaacacctaactgtcaccaacaa |
10193955 |
T |
|
| Q |
649 |
tcccccagctattggttatgggcac |
673 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
10193954 |
tcccccagctattggttatgggcac |
10193930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 5e-27; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 276 - 421
Target Start/End: Original strand, 2339047 - 2339185
Alignment:
| Q |
276 |
agtcctcagttatctaatgggatattacctcactcgctaatgctattatcttcaaaatctggtggattttctaagggttcagttggactaaagttttaga |
375 |
Q |
| |
|
||||||| |||||||| ||||| |||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| ||||||| || |
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| T |
2339047 |
agtcctcggttatctagtgggacattacctcactcgcta------ttatcttcaaaatctggtgaattttctaatggttcagttggac-caagttttgga |
2339139 |
T |
|
| Q |
376 |
ccgtcttcaatgaaaaatgcatctggagcattacagaaaaagaagg |
421 |
Q |
| |
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|| |||||| |||| |||||||| ||||||||||| ||| |||||| |
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|
| T |
2339140 |
ccatcttcagtgaacaatgcatcaggagcattacaaaaagagaagg |
2339185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 2338946 - 2338999
Alignment:
| Q |
211 |
ggcttcaacaaagaatggcacaacatgcatccatgagacctaatttcccacaga |
264 |
Q |
| |
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||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
2338946 |
ggcttcagcaaagaatgccacaacatgcatccatgagacctaatttcccacaga |
2338999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 449 - 498
Target Start/End: Original strand, 2339177 - 2339226
Alignment:
| Q |
449 |
aagagaagactgcaatggcttcacatacagctgctgttggaactccatct |
498 |
Q |
| |
|
|||||||| | ||||||||||||| ||| ||||||||||||||||||||| |
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|
| T |
2339177 |
aagagaaggcagcaatggcttcacgtactgctgctgttggaactccatct |
2339226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 500 - 532
Target Start/End: Original strand, 2339254 - 2339286
Alignment:
| Q |
500 |
caaaggcaacaacagacacacctagctgcaaaa |
532 |
Q |
| |
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||||||||||||||| ||||||||||||||||| |
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|
| T |
2339254 |
caaaggcaacaacaggcacacctagctgcaaaa |
2339286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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