View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0752_low_2 (Length: 549)
Name: NF0752_low_2
Description: NF0752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0752_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 30 - 485
Target Start/End: Original strand, 52698544 - 52698999
Alignment:
| Q |
30 |
caaagaagcaagccaaggccaaaacttattcttgtatagtgcacttggcctcattgccttgggtactggaggaatcaaaccttgtgtttcctcatttgga |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52698544 |
caaagaagcaagccaaggccaaaacttattcttgtatagtgcacttggcctcattgccttgggtactggaggaatcaaaccttgtgtttcctcatttgga |
52698643 |
T |
|
| Q |
130 |
gctgatcaatttgacgagggagatgaaaaagaagtccaaatgaaattctctttctttaattggttttactttgccatcaacatgggtgcccttcttggaa |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52698644 |
gctgatcaatttgacgagggagatgaaaaagaagtccaaatgaaattctctttctttaattggttttactttgccatcaacatgggtgcccttcttggaa |
52698743 |
T |
|
| Q |
230 |
ttacactattggtttatttacaaaaccaagtagggtggagttggggttttgcattacccacaataactacgattatatctatcgttatcttggccgttgg |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52698744 |
ttacactattggtttatttacaaaaccaagtagggtggagttggggttttgcattacccacaataactacgattatatctatcgttatcttggccgttgg |
52698843 |
T |
|
| Q |
330 |
tattccgtattatcgttttcaaaaaccaatgggaagcccattcactaggtttcttcaggttattgtagcttctataaagaaacatcgaggaggagtctca |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52698844 |
tattccgtattatcgttttcaaaaaccaatgggaagcccattcactaggtttcttcaggttattgtagcttctataaagaaacatcgaggaggagtctca |
52698943 |
T |
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| Q |
430 |
gtagaaaatgaaactcctctctatgaggttgaaaccacatactctgatattattgg |
485 |
Q |
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| T |
52698944 |
gtagaaaatgaaactcctctctatgaggttgaaaccacatactctgatattattgg |
52698999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 37 - 485
Target Start/End: Original strand, 52721191 - 52721639
Alignment:
| Q |
37 |
gcaagccaaggccaaaacttattcttgtatagtgcacttggcctcattgccttgggtactggaggaatcaaaccttgtgtttcctcatttggagctgatc |
136 |
Q |
| |
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||||| |||||||||| || |||||||| ||||||||||||| ||||| |||||||| ||||||||||| |||||||| || || |||||||| || | |
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| T |
52721191 |
gcaagtcaaggccaaatctccttcttgtacggtgcacttggccttattgctttgggtacaggaggaatcaagccttgtgtatcatcctttggagcagacc |
52721290 |
T |
|
| Q |
137 |
aatttgacgagggagatgaaaaagaagtccaaatgaaattctctttctttaattggttttactttgccatcaacatgggtgcccttcttggaattacact |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||| |||||| |||||||||||| | ||||||||||| || | |
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| T |
52721291 |
aatttgacgagggagatgaaaaagaagtccaacagaaatacgctttctttaattggtttttctttgctatcaacatgggttctcttcttggaatcacgat |
52721390 |
T |
|
| Q |
237 |
attggtttatttacaaaaccaagtagggtggagttggggttttgcattacccacaataactacgattatatctatcgttatcttggccgttggtattccg |
336 |
Q |
| |
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|||||||||| |||| | || |||||||| |||||||||||| | ||||||||||||||| | || ||||||||||| | | || | |||| ||| | |
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| T |
52721391 |
attggtttatgcacaagataaactagggtggggttggggttttggaatacccacaataactatggttttatctatcgttcttctagctgctggtgttcgg |
52721490 |
T |
|
| Q |
337 |
tattatcgttttcaaaaaccaatgggaagcccattcactaggtttcttcaggttattgtagcttctataaagaaacatcgaggaggagtctcagtagaaa |
436 |
Q |
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||||| ||||||||||| |||||||||||||| || |||||||||||||||||||||||||| || | |||||||||||| |||||| || ||||||| |
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| T |
52721491 |
tattaccgttttcaaaagccaatgggaagcccttttactaggtttcttcaggttattgtagcctccgtcaagaaacatcgaaaaggagtttccgtagaaa |
52721590 |
T |
|
| Q |
437 |
atgaaactcctctctatgaggttgaaaccacatactctgatattattgg |
485 |
Q |
| |
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||||| || |||||||||||||||| |||||| |||||||||||||||| |
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| T |
52721591 |
atgaacctactctctatgaggttgagaccacacactctgatattattgg |
52721639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 34 - 485
Target Start/End: Original strand, 52712367 - 52712818
Alignment:
| Q |
34 |
gaagcaagccaaggccaaaacttattcttgtatagtgcacttggcctcattgccttgggtactggaggaatcaaaccttgtgtttcctcatttggagctg |
133 |
Q |
| |
|
|||||||| |||| |||| || ||||||||| |||||||||| ||||||||||| ||||| |||||||||||||||||||| || || |||||||| | |
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| T |
52712367 |
gaagcaagtcaagctcaaatctcattcttgtacggtgcacttggtctcattgccttaggtaccggaggaatcaaaccttgtgtatcatcctttggagcag |
52712466 |
T |
|
| Q |
134 |
atcaatttgacgagggagatgaaaaagaagtccaaatgaaattctctttctttaattggttttactttgccatcaacatgggtgcccttcttggaattac |
233 |
Q |
| |
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| |||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||| |||||| |||||||||||||| ||||||||||| || |
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| T |
52712467 |
accaatttgacgagggagatgaaaaagaagtccaaaagaaatacgctttctttaattggtttttctttgctatcaacatgggtgctcttcttggaatcac |
52712566 |
T |
|
| Q |
234 |
actattggtttatttacaaaaccaagtagggtggagttggggttttgcattacccacaataactacgattatatctatcgttatcttggccgttggtatt |
333 |
Q |
| |
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||||||||||| |||| | || |||||||| |||||||||||| | | ||||||||||||||| || ||||||||||| | | || | ||| || |
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| T |
52712567 |
gatattggtttatgcacaagataaactagggtggggttggggttttggaattcccacaataactacggttttatctatcgttgttctagctgccggtgtt |
52712666 |
T |
|
| Q |
334 |
ccgtattatcgttttcaaaaaccaatgggaagcccattcactaggtttcttcaggttattgtagcttctataaagaaacatcgaggaggagtctcagtag |
433 |
Q |
| |
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| |||||| ||||| ||||| |||||||||||||| || |||||||||||||||||||||||||| || | |||||||||| | |||||||||| |||| |
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| T |
52712667 |
cggtattaccgtttccaaaagccaatgggaagcccttttactaggtttcttcaggttattgtagcctccgtcaagaaacatcaaagaggagtctccgtag |
52712766 |
T |
|
| Q |
434 |
aaaatgaaactcctctctatgaggttgaaaccacatactctgatattattgg |
485 |
Q |
| |
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||||||| || ||||||| |||||||| |||||| |||||||||||||||| |
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|
| T |
52712767 |
aaaatgagcctactctctacgaggttgagaccacacactctgatattattgg |
52712818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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