View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0752_low_20 (Length: 291)

Name: NF0752_low_20
Description: NF0752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0752_low_20
NF0752_low_20
[»] chr7 (27 HSPs)
chr7 (16-147)||(37915985-37916116)
chr7 (160-222)||(4639869-4639931)
chr7 (160-222)||(14741469-14741531)
chr7 (160-222)||(23017035-23017097)
chr7 (106-144)||(4639975-4640013)
chr7 (106-144)||(14741387-14741425)
chr7 (160-222)||(21067870-21067932)
chr7 (160-222)||(44256408-44256470)
chr7 (56-105)||(19845407-19845456)
chr7 (56-105)||(35888558-35888607)
chr7 (56-97)||(40299092-40299133)
chr7 (56-105)||(47648918-47648967)
chr7 (56-105)||(49044860-49044909)
chr7 (53-105)||(8781949-8782001)
chr7 (160-214)||(1254471-1254525)
chr7 (160-222)||(7993647-7993709)
chr7 (160-214)||(19594253-19594307)
chr7 (160-214)||(21024109-21024163)
chr7 (55-105)||(27813748-27813798)
chr7 (59-105)||(33682959-33683005)
chr7 (160-214)||(34656648-34656702)
chr7 (160-222)||(37328397-37328459)
chr7 (160-222)||(47067200-47067262)
chr7 (160-216)||(8675821-8675878)
chr7 (56-105)||(32643544-32643593)
chr7 (56-97)||(42887820-42887861)
chr7 (64-105)||(43934837-43934878)
[»] chr3 (34 HSPs)
chr3 (160-222)||(49296159-49296221)
chr3 (160-222)||(8598702-8598764)
chr3 (160-222)||(21386480-21386542)
chr3 (160-222)||(53836005-53836067)
chr3 (160-222)||(22489480-22489542)
chr3 (56-105)||(36584953-36585002)
chr3 (49-105)||(48902442-48902498)
chr3 (54-105)||(32968964-32969015)
chr3 (160-222)||(4962727-4962789)
chr3 (160-222)||(33693299-33693361)
chr3 (160-222)||(49458401-49458463)
chr3 (56-105)||(42043994-42044043)
chr3 (49-105)||(48903996-48904052)
chr3 (104-144)||(49296075-49296115)
chr3 (54-105)||(24813832-24813883)
chr3 (54-105)||(45404622-45404673)
chr3 (58-105)||(52693442-52693489)
chr3 (106-144)||(8598620-8598658)
chr3 (160-214)||(47467415-47467469)
chr3 (189-222)||(16155236-16155269)
chr3 (56-105)||(34811561-34811610)
chr3 (104-147)||(22489574-22489617)
chr3 (54-105)||(30820148-30820199)
chr3 (160-214)||(9818568-9818622)
chr3 (160-222)||(26107819-26107881)
chr3 (160-222)||(48379640-48379702)
chr3 (160-214)||(49293846-49293900)
chr3 (106-144)||(53835923-53835961)
chr3 (52-105)||(8379925-8379978)
chr3 (56-105)||(12918578-12918627)
chr3 (169-222)||(42736359-42736412)
chr3 (160-212)||(45602422-45602475)
chr3 (53-105)||(27646043-27646095)
chr3 (53-105)||(47008239-47008291)
[»] chr8 (18 HSPs)
chr8 (160-222)||(19484258-19484320)
chr8 (54-105)||(36941516-36941567)
chr8 (160-222)||(8029836-8029898)
chr8 (160-214)||(28317075-28317129)
chr8 (56-105)||(23425057-23425106)
chr8 (106-144)||(19484176-19484214)
chr8 (162-215)||(12522436-12522489)
chr8 (56-105)||(26626040-26626089)
chr8 (169-216)||(26620347-26620394)
chr8 (160-222)||(10294986-10295048)
chr8 (59-105)||(23894651-23894697)
chr8 (158-216)||(27915580-27915638)
chr8 (158-216)||(27961999-27962057)
chr8 (160-222)||(31625800-31625862)
chr8 (55-105)||(43292737-43292787)
chr8 (56-105)||(5110129-5110178)
chr8 (160-212)||(17234757-17234810)
chr8 (169-222)||(43166323-43166376)
[»] chr6 (20 HSPs)
chr6 (160-222)||(1463666-1463728)
chr6 (160-222)||(6788143-6788205)
chr6 (104-144)||(6788059-6788099)
chr6 (161-209)||(31535068-31535116)
chr6 (105-144)||(1452080-1452119)
chr6 (105-144)||(1463772-1463811)
chr6 (160-222)||(2606938-2607000)
chr6 (160-222)||(10113775-10113837)
chr6 (106-144)||(10113881-10113919)
chr6 (160-222)||(31975647-31975709)
chr6 (160-214)||(31996251-31996305)
chr6 (56-105)||(9038888-9038937)
chr6 (160-213)||(21199597-21199650)
chr6 (160-222)||(3000283-3000345)
chr6 (71-105)||(22710519-22710553)
chr6 (56-105)||(2364409-2364458)
chr6 (56-105)||(13321068-13321117)
chr6 (56-105)||(22998785-22998834)
chr6 (56-105)||(23789570-23789619)
chr6 (56-105)||(28980595-28980644)
[»] chr5 (19 HSPs)
chr5 (160-222)||(7125161-7125223)
chr5 (160-222)||(5651183-5651245)
chr5 (160-222)||(28623163-28623225)
chr5 (160-222)||(37798116-37798178)
chr5 (160-214)||(2675078-2675132)
chr5 (55-105)||(31657932-31657982)
chr5 (55-105)||(35784659-35784709)
chr5 (56-105)||(1303317-1303366)
chr5 (56-105)||(13236187-13236236)
chr5 (106-144)||(7125267-7125305)
chr5 (160-214)||(21238763-21238817)
chr5 (56-105)||(7001550-7001599)
chr5 (66-105)||(16284940-16284979)
chr5 (54-105)||(23259876-23259927)
chr5 (55-105)||(21069885-21069935)
chr5 (160-214)||(33892846-33892900)
chr5 (160-222)||(37014346-37014408)
chr5 (55-105)||(41686854-41686904)
chr5 (106-143)||(28623270-28623307)
[»] chr4 (30 HSPs)
chr4 (160-222)||(29469206-29469268)
chr4 (160-222)||(42937409-42937471)
chr4 (160-222)||(8084252-8084314)
chr4 (55-105)||(32684843-32684893)
chr4 (55-105)||(3085690-3085740)
chr4 (160-222)||(23671372-23671434)
chr4 (160-222)||(50517236-50517298)
chr4 (160-222)||(29510064-29510126)
chr4 (160-222)||(41725605-41725667)
chr4 (160-214)||(51967320-51967374)
chr4 (56-105)||(29509053-29509102)
chr4 (162-222)||(37916283-37916343)
chr4 (160-216)||(46286752-46286808)
chr4 (160-214)||(6487324-6487378)
chr4 (55-105)||(7776683-7776733)
chr4 (106-144)||(8084170-8084208)
chr4 (160-214)||(9972816-9972870)
chr4 (160-222)||(29856008-29856070)
chr4 (160-222)||(49501180-49501242)
chr4 (160-222)||(49507245-49507307)
chr4 (160-212)||(871852-871905)
chr4 (56-105)||(6629216-6629265)
chr4 (56-105)||(21265467-21265516)
chr4 (160-213)||(26491130-26491183)
chr4 (173-214)||(26955392-26955433)
chr4 (160-213)||(29966401-29966454)
chr4 (56-105)||(35909890-35909939)
chr4 (56-105)||(37779955-37780004)
chr4 (173-213)||(23170738-23170778)
chr4 (49-105)||(23390081-23390137)
[»] chr1 (30 HSPs)
chr1 (160-222)||(1243301-1243363)
chr1 (160-222)||(4005131-4005193)
chr1 (160-222)||(26757679-26757741)
chr1 (160-222)||(41353485-41353547)
chr1 (161-222)||(51106957-51107018)
chr1 (160-222)||(8147381-8147443)
chr1 (160-222)||(9192088-9192150)
chr1 (167-222)||(11579095-11579150)
chr1 (49-97)||(23893430-23893478)
chr1 (160-222)||(47371570-47371632)
chr1 (56-105)||(4279868-4279917)
chr1 (56-105)||(27479846-27479895)
chr1 (105-144)||(26757596-26757635)
chr1 (106-144)||(1243407-1243445)
chr1 (160-222)||(3583551-3583613)
chr1 (106-144)||(4005049-4005087)
chr1 (106-144)||(9192006-9192044)
chr1 (106-144)||(41353403-41353441)
chr1 (160-222)||(45273058-45273120)
chr1 (67-105)||(49549249-49549287)
chr1 (106-144)||(51106874-51106912)
chr1 (106-147)||(11579189-11579230)
chr1 (56-105)||(17483980-17484029)
chr1 (56-105)||(52429135-52429184)
chr1 (162-222)||(5209363-5209423)
chr1 (104-144)||(8147297-8147337)
chr1 (160-216)||(35177211-35177267)
chr1 (159-209)||(49236974-49237024)
chr1 (160-222)||(49453055-49453117)
chr1 (56-104)||(30996993-30997040)
[»] chr2 (22 HSPs)
chr2 (160-222)||(18899924-18899986)
chr2 (160-220)||(15224273-15224333)
chr2 (55-105)||(30858186-30858236)
chr2 (56-105)||(41494362-41494411)
chr2 (160-214)||(3991816-3991870)
chr2 (160-214)||(13898519-13898573)
chr2 (160-214)||(14039136-14039190)
chr2 (106-144)||(18900030-18900068)
chr2 (160-222)||(40829679-40829741)
chr2 (160-213)||(18727652-18727705)
chr2 (56-105)||(31633587-31633636)
chr2 (56-105)||(36750624-36750673)
chr2 (56-105)||(41422760-41422809)
chr2 (140-213)||(43318766-43318838)
chr2 (160-216)||(35404321-35404377)
chr2 (160-214)||(11153354-11153408)
chr2 (55-105)||(21838864-21838914)
chr2 (160-214)||(38413458-38413512)
chr2 (56-105)||(9701318-9701367)
chr2 (189-222)||(38295714-38295747)
chr2 (53-105)||(6028590-6028642)
chr2 (49-89)||(40544590-40544630)
[»] scaffold1128 (1 HSPs)
scaffold1128 (160-222)||(900-962)
[»] scaffold0421 (1 HSPs)
scaffold0421 (160-214)||(1742-1796)
[»] scaffold0263 (1 HSPs)
scaffold0263 (106-144)||(501-539)
[»] scaffold0013 (1 HSPs)
scaffold0013 (160-216)||(89323-89379)
[»] scaffold0383 (1 HSPs)
scaffold0383 (160-215)||(16684-16739)
[»] scaffold0152 (2 HSPs)
scaffold0152 (160-215)||(20920-20975)
scaffold0152 (160-215)||(28826-28881)
[»] scaffold0049 (1 HSPs)
scaffold0049 (54-105)||(89-140)
[»] scaffold0294 (1 HSPs)
scaffold0294 (55-105)||(11401-11451)
[»] scaffold0236 (1 HSPs)
scaffold0236 (56-105)||(17712-17761)
[»] scaffold0110 (1 HSPs)
scaffold0110 (162-215)||(39290-39343)
[»] scaffold0009 (1 HSPs)
scaffold0009 (56-105)||(246703-246752)


Alignment Details
Target: chr7 (Bit Score: 124; Significance: 8e-64; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 37916116 - 37915985
Alignment:
Q  16 gatgaagagttgtgttgtaggaaaaatgatcagaaaattatactacctctgtccctaaatataggagttttttgtcaaaattgcggagatcaatgttcca 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37916116 gatgtagagttgtgttgtaggaaaaatgatcagaaaattatactacctctgtccctaaatataggagttttttgtcaaaattgcggagatcaatgttcca 37916017  T
Q  116 caaatcgcgcgtcaactcggcgagtttacgtg 147  Q
    ||||||||| ||||||||||||||||||||||    
T  37916016 caaatcgcgtgtcaactcggcgagtttacgtg 37915985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 4639931 - 4639869
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    ||||||| |||||||||||||||| | | ||||||||||||||||||||||||||||||||||    
T  4639931 taaactctatttctggtaaaatcggaaattttgacgagtttgaccgagttaacactcagtaaa 4639869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 14741469 - 14741531
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||| ||||||||| | | ||||||||||||||||||||||||||||||||||    
T  14741469 taaactcgatttctagtaaaatcggaaagtttgacgagtttgaccgagttaacactcagtaaa 14741531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 23017035 - 23017097
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||| ||||||| | |  ||||||||||||||||||||||||||||| |||||    
T  23017035 taaactcgatttctcgtaaaattggaagatttgacgagtttgaccgagttaacactcggtaaa 23017097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 4640013 - 4639975
Alignment:
Q  106 caatgttccacaaatcgcgcgtcaactcggcgagtttac 144  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  4640013 caatgttccacaaatcgcgtgtcaactcggcgagtttac 4639975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 14741387 - 14741425
Alignment:
Q  106 caatgttccacaaatcgcgcgtcaactcggcgagtttac 144  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  14741387 caatgttccacaaatcgcgtgtcaactcggcgagtttac 14741425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 21067870 - 21067932
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||||| |   ||| ||||||||||| |||||||||||| |||||    
T  21067870 taaactcgatttctggtaaaatcggaaggtttaacgagtttgactgagttaacactcggtaaa 21067932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 44256470 - 44256408
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||||| |   ||| ||||||||||| |||||||||||| |||||    
T  44256470 taaactcgatttctggtaaaatcggaaggtttaacgagtttgactgagttaacactcggtaaa 44256408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 19845407 - 19845456
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| |||||||||||||||||| ||||| ||||||| |||||||    
T  19845407 tactacctccgtccctaaatataggagtcttttgccaaaattacggagat 19845456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 35888607 - 35888558
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| ||||||||||||| |||| |||||| ||||||||||||||    
T  35888607 tactacctccgtccctaaatataagagtcttttgttaaaattgcggagat 35888558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 40299092 - 40299133
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaatt 97  Q
    ||||||||| |||||||||||||||||| |||||||||||||    
T  40299092 tactacctccgtccctaaatataggagtcttttgtcaaaatt 40299133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 47648918 - 47648967
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| |||| |||||||||||| |||||| |||||||||||||||    
T  47648918 tactacctccgtccataaatataggagctttttgccaaaattgcggagat 47648967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 49044860 - 49044909
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| |||||||||||||||||  ||||| |||||||||||||||    
T  49044860 tactacctccgtccctaaatataggagccttttgccaaaattgcggagat 49044909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 8781949 - 8782001
Alignment:
Q  53 ttatactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    |||||||||||| ||||||||||||| |||  ||||| |||||||||||||||    
T  8781949 ttatactacctccgtccctaaatatatgagccttttgccaaaattgcggagat 8782001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 1254525 - 1254471
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacac 214  Q
    |||||||||||| |||| |||||| ||  ||||| ||||||||||||||||||||    
T  1254525 taaactcgatttttggtgaaatcggactgtttgatgagtttgaccgagttaacac 1254471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 7993647 - 7993709
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||| ||||||||||||||| |   ||| ||||||||||| |||||||||||| |||||    
T  7993647 taaactcggtttctggtaaaatcggaaggtttaacgagtttgactgagttaacactcggtaaa 7993709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 19594253 - 19594307
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacac 214  Q
    |||||||| ||| |||| |||||| | | ||||||||||||||||||||||||||    
T  19594253 taaactcggtttttggtgaaatcggaaagtttgacgagtttgaccgagttaacac 19594307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 21024109 - 21024163
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacac 214  Q
    |||||||| ||| |||| |||||| | | ||||||||||||||||||||||||||    
T  21024109 taaactcggtttttggtgaaatcggaaagtttgacgagtttgaccgagttaacac 21024163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 27813798 - 27813748
Alignment:
Q  55 atactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    |||||||||| |||||||||||||||||  |||||  ||||||||||||||    
T  27813798 atactacctccgtccctaaatataggagccttttgcaaaaattgcggagat 27813748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 33683005 - 33682959
Alignment:
Q  59 tacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    |||||| || ||||||||||||||  |||||||||||||||||||||    
T  33683005 tacctccgtacctaaatataggagccttttgtcaaaattgcggagat 33682959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 34656648 - 34656702
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacac 214  Q
    |||| ||| ||| |||| |||||||| | ||||||||||||||||||||||||||    
T  34656648 taaattcggtttttggtgaaatcgaaaagtttgacgagtttgaccgagttaacac 34656702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 37328397 - 37328459
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||||| |   ||| ||| ||||||| |||||||||||| |||||    
T  37328397 taaactcgatttctggtaaaatcggaaggtttaacgtgtttgactgagttaacactcggtaaa 37328459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 47067200 - 47067262
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||| ||||||||||||||||| |||   ||| ||||||||||| |||||||||||| |||||    
T  47067200 taaaatcgatttctggtaaaattgaaaggtttaacgagtttgactgagttaacactcggtaaa 47067262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 8675821 - 8675878
Alignment:
Q  160 taaactcgatttctggtaaaa-tcgaacaatttgacgagtttgaccgagttaacactc 216  Q
    |||||||| |||||||||||| |||||   ||||||||||||||| ||||||||||||    
T  8675821 taaactcggtttctggtaaaaatcgaaaggtttgacgagtttgactgagttaacactc 8675878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 32643544 - 32643593
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| |||||||||||||||||| |||||  |||||| |||||||    
T  32643544 tactacctcagtccctaaatataggagtcttttgcaaaaattacggagat 32643593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 42887820 - 42887861
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaatt 97  Q
    ||||||||| |||||||||||||||||  |||||||||||||    
T  42887820 tactacctccgtccctaaatataggagcattttgtcaaaatt 42887861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 43934878 - 43934837
Alignment:
Q  64 ctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    |||||||||||||||||||  |||||| ||||||||||||||    
T  43934878 ctgtccctaaatataggagccttttgtgaaaattgcggagat 43934837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 49296159 - 49296221
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  49296159 taaactcgatttctggtaaaatcgaaaagtttgacgagtttgaccgagttaacactcagtaaa 49296221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 8598702 - 8598764
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||    
T  8598702 taaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacactcagtaaa 8598764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 21386542 - 21386480
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||| |||||| |||||    
T  21386542 taaactcgatttctggtaaaatcgaaaagtttgacgagtttgaccgagttgacactcggtaaa 21386480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 53836005 - 53836067
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||| ||||||||||||||||| | | ||||||||||||||||||||||||||||||||||    
T  53836005 taaacttgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacactcagtaaa 53836067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 22489542 - 22489480
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||||| |   ||| ||||||||||||||||||||||||||||||    
T  22489542 taaactcgatttctggtaaaatcggaaggtttaacgagtttgaccgagttaacactcagtaaa 22489480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 36585002 - 36584953
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  36585002 tactacctccgtccctaaatataggagctttttgtcaaaattgcggagat 36584953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 48902442 - 48902498
Alignment:
Q  49 aaaattatactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    |||||||||||||||| |||||||||||||||||  ||||| |||||||||||||||    
T  48902442 aaaattatactacctccgtccctaaatataggagcattttgccaaaattgcggagat 48902498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 32968964 - 32969015
Alignment:
Q  54 tatactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||||||||||    
T  32968964 tatactacctccgtccctaaatataggagtcttttgccaaaattgcggagat 32969015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 4962789 - 4962727
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||  |||||||||||   |||||||||||||||||||||||||||| |||||    
T  4962789 taaactcgatttcaagtaaaatcgaaaggtttgacgagtttgaccgagttaacactcggtaaa 4962727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 33693299 - 33693361
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||||  |   |||||||||||||||||||||||||||| |||||    
T  33693299 taaactcgatttctggtaaaatcagaaggtttgacgagtttgaccgagttaacactcggtaaa 33693361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 49458401 - 49458463
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||||| |   |||||||||||||||| | |||||||||||||||    
T  49458401 taaactcgatttctggtaaaatcggaaggtttgacgagtttgaccaaattaacactcagtaaa 49458463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 42043994 - 42044043
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| ||||||||||||||||| |||||||||||| |||||||||    
T  42043994 tactacctccgtccctaaatataggagctttttgtcaaaaatgcggagat 42044043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 48903996 - 48904052
Alignment:
Q  49 aaaattatactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||| |||||||||| || ||||||||||||||  |||||||||||||||||||||    
T  48903996 aaaatgatactacctccgttcctaaatataggagcattttgtcaaaattgcggagat 48904052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 49296075 - 49296115
Alignment:
Q  104 atcaatgttccacaaatcgcgcgtcaactcggcgagtttac 144  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  49296075 atcaatgttccacaaatcgcgtgtcaactcggcgagtttac 49296115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 24813883 - 24813832
Alignment:
Q  54 tatactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||||||||||||||||||| |||| ||||| ||||||||| |||||    
T  24813883 tatactacctctgtccctaaatataagagtcttttgccaaaattgcagagat 24813832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 45404673 - 45404622
Alignment:
Q  54 tatactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||||| |||||||||||||||||  ||||| |||||||||||||||    
T  45404673 tatactacctccgtccctaaatataggagccttttgccaaaattgcggagat 45404622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 52693442 - 52693489
Alignment:
Q  58 ctacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  52693442 ctacctctgtccctaaatataagagctttttgttaaaattgcggagat 52693489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 8598620 - 8598658
Alignment:
Q  106 caatgttccacaaatcgcgcgtcaactcggcgagtttac 144  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  8598620 caatgttccacaaatcgcgtgtcaactcggcgagtttac 8598658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 47467469 - 47467415
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacac 214  Q
    |||||||| ||| |||| |||||||| | ||||||||||||||||||||||||||    
T  47467469 taaactcggtttttggtgaaatcgaaaattttgacgagtttgaccgagttaacac 47467415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 16155236 - 16155269
Alignment:
Q  189 tttgacgagtttgaccgagttaacactcagtaaa 222  Q
    ||||||||||||||||||||||||||||||||||    
T  16155236 tttgacgagtttgaccgagttaacactcagtaaa 16155269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 34811610 - 34811561
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| |||||||||||||| ||  |||||||||||||||||||||    
T  34811610 tactacctccgtccctaaatatagtagccttttgtcaaaattgcggagat 34811561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 22489617 - 22489574
Alignment:
Q  104 atcaatgttccacaaatcgcgcgtcaactcggcgagtttacgtg 147  Q
    ||||||||||||||||||| | ||||||||| ||||||||||||    
T  22489617 atcaatgttccacaaatcgtgtgtcaactcgacgagtttacgtg 22489574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 30820199 - 30820148
Alignment:
Q  54 tatactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||||| ||||||||||||| |||  ||||||||||||| |||||||    
T  30820199 tatactacctccgtccctaaatataagagccttttgtcaaaattacggagat 30820148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 9818622 - 9818568
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacac 214  Q
    |||||||||||| |||| |||||| | | |||||||||||||||||||| |||||    
T  9818622 taaactcgatttttggtgaaatcggaaagtttgacgagtttgaccgagtgaacac 9818568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 26107819 - 26107881
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||| ||||| |   ||| ||||||||||| |||||||||||| |||||    
T  26107819 taaactcgatttctggtacaatcggaaggtttaacgagtttgactgagttaacactcggtaaa 26107881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 48379640 - 48379702
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||||| |    || ||||||||||| |||||||||||| |||||    
T  48379640 taaactcgatttctggtaaaatcggaaggcttaacgagtttgactgagttaacactcggtaaa 48379702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 49293846 - 49293900
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacac 214  Q
    |||||||||||| |||| |||||| | | |||||||||||||||||| |||||||    
T  49293846 taaactcgatttttggtgaaatcggaaagtttgacgagtttgaccgaattaacac 49293900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 53835923 - 53835961
Alignment:
Q  106 caatgttccacaaatcgcgcgtcaactcggcgagtttac 144  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  53835923 caatgttccacaaatcgcgtgtcaattcggcgagtttac 53835961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 8379978 - 8379925
Alignment:
Q  52 attatactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||||||| |||||||||||||| ||| |||||  |||||| |||||||    
T  8379978 attatactacctccgtccctaaatatagaagtcttttgaaaaaattacggagat 8379925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 12918578 - 12918627
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| ||||||||||||| |||  ||||| |||||||||||||||    
T  12918578 tactacctccgtccctaaatatatgagccttttgccaaaattgcggagat 12918627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 42736359 - 42736412
Alignment:
Q  169 tttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||| || | |||||||||||||| |||||||||| || |||||    
T  42736359 tttctggtaaaatcaaaaagtttgacgagtttgatcgagttaacattcggtaaa 42736412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 45602475 - 45602422
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgac-cgagttaac 212  Q
    ||||||| ||||||||||||||||||   ||||||||||||||| |||||||||    
T  45602475 taaactcaatttctggtaaaatcgaaatgtttgacgagtttgactcgagttaac 45602422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 27646043 - 27646095
Alignment:
Q  53 ttatactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    |||||||||||| |||||||| |||||||| ||||||  |||||| |||||||    
T  27646043 ttatactacctccgtccctaattataggagctttttgcaaaaattacggagat 27646095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 47008239 - 47008291
Alignment:
Q  53 ttatactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    |||||||||||| ||||||||||||||||   ||||| ||||||| |||||||    
T  47008239 ttatactacctccgtccctaaatataggacccttttgccaaaattacggagat 47008291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 19484258 - 19484320
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||    
T  19484258 taaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacactcagtaaa 19484320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 36941567 - 36941516
Alignment:
Q  54 tatactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  36941567 tatactacctccgtccctaaatataggagtcttttgtcaaaattgcggagat 36941516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 8029898 - 8029836
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||||| |   |||||||||||||||||||||||||||| |||||    
T  8029898 taaactcgatttctggtaaaatcggaaggtttgacgagtttgaccgagttaacactcggtaaa 8029836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 28317129 - 28317075
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacac 214  Q
    |||||||||||| |||| |||||||| | ||||||||||||||||||||||||||    
T  28317129 taaactcgatttttggtgaaatcgaaaagtttgacgagtttgaccgagttaacac 28317075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 23425106 - 23425057
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    |||||||||||||||||||||||||||  ||||||||||||| |||||||    
T  23425106 tactacctctgtccctaaatataggagcattttgtcaaaattacggagat 23425057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 19484176 - 19484214
Alignment:
Q  106 caatgttccacaaatcgcgcgtcaactcggcgagtttac 144  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  19484176 caatgttccacaaatcgcgtgtcaactcggcgagtttac 19484214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 12522489 - 12522436
Alignment:
Q  162 aactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacact 215  Q
    |||||| ||||||||||||| |||   |||||||||||||||||||||||||||    
T  12522489 aactcggtttctggtaaaattgaaaggtttgacgagtttgaccgagttaacact 12522436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 26626089 - 26626040
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| |||||||||||||||||| |||||  ||||||||||||||    
T  26626089 tactacctccgtccctaaatataggagtcttttgcaaaaattgcggagat 26626040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 26620394 - 26620347
Alignment:
Q  169 tttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactc 216  Q
    |||||| |||||||||| | |||||||||||||| |||||||||||||    
T  26620394 tttctgataaaatcgaaaagtttgacgagtttgatcgagttaacactc 26620347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 10295048 - 10294986
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||| ||||||||||||||| |   ||| ||||||||||| |||||||||||| |||||    
T  10295048 taaactcggtttctggtaaaatcggaaggtttaacgagtttgactgagttaacactcggtaaa 10294986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 23894651 - 23894697
Alignment:
Q  59 tacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    |||||| |||||||||||||||| |||||||| |||||| |||||||    
T  23894651 tacctccgtccctaaatataggaattttttgttaaaattacggagat 23894697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 27915638 - 27915580
Alignment:
Q  158 tttaaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactc 216  Q
    |||||| |||||||||| ||||||||     ||||||||||||||||||||||||||||    
T  27915638 tttaaattcgatttctgataaaatcggtaggtttgacgagtttgaccgagttaacactc 27915580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 27962057 - 27961999
Alignment:
Q  158 tttaaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactc 216  Q
    |||||| |||||||||| ||||||||     ||||||||||||||||||||||||||||    
T  27962057 tttaaattcgatttctgataaaatcggtaggtttgacgagtttgaccgagttaacactc 27961999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 31625800 - 31625862
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||| ||||||||||||||| |   ||| ||||||||||| |||||||||||| |||||    
T  31625800 taaactcggtttctggtaaaatcggaaggtttaacgagtttgactgagttaacactcggtaaa 31625862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 43292737 - 43292787
Alignment:
Q  55 atactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    |||||||||| |||||||||||||||||  ||||| ||||||| |||||||    
T  43292737 atactacctccgtccctaaatataggagccttttgccaaaattacggagat 43292787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 5110178 - 5110129
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    |||||||||  ||||||||||||||||||||||  ||||||| |||||||    
T  5110178 tactacctccatccctaaatataggagttttttaccaaaattacggagat 5110129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 17234757 - 17234810
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgac-cgagttaac 212  Q
    |||||||||||||||||||||||| |   ||||||||||||||| |||||||||    
T  17234757 taaactcgatttctggtaaaatcggaatgtttgacgagtttgactcgagttaac 17234810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 43166376 - 43166323
Alignment:
Q  169 tttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    ||||||||||||| |||   ||||||||||||||| |||||||||||| |||||    
T  43166376 tttctggtaaaattgaaaggtttgacgagtttgactgagttaacactcggtaaa 43166323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 1463728 - 1463666
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||    
T  1463728 taaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacactcagtaaa 1463666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 6788143 - 6788205
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||    
T  6788143 taaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacactcagtaaa 6788205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 6788059 - 6788099
Alignment:
Q  104 atcaatgttccacaaatcgcgcgtcaactcggcgagtttac 144  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  6788059 atcaatgttccacaaatcgcgtgtcaactcggcgagtttac 6788099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 31535116 - 31535068
Alignment:
Q  161 aaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagtt 209  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||    
T  31535116 aaactcgatttctggtaaaatcgaaaggtttgacgagtttgaccgagtt 31535068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 1452119 - 1452080
Alignment:
Q  105 tcaatgttccacaaatcgcgcgtcaactcggcgagtttac 144  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  1452119 tcaatgttccacaaatcgcgtgtcaactcggcgagtttac 1452080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 1463811 - 1463772
Alignment:
Q  105 tcaatgttccacaaatcgcgcgtcaactcggcgagtttac 144  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  1463811 tcaatgttccacaaatcgcgtgtcaactcggcgagtttac 1463772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 2606938 - 2607000
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||||  |   ||||| ||||||||||||||||||||||| ||||    
T  2606938 taaactcgatttctggtaaaatcagaaggtttgatgagtttgaccgagttaacactcaataaa 2607000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 10113837 - 10113775
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||| ||| ||||||||||| | | ||||||||||||||||||||| | ||||||||||    
T  10113837 taaactcgttttttggtaaaatcggaaagtttgacgagtttgaccgagtttagactcagtaaa 10113775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 10113919 - 10113881
Alignment:
Q  106 caatgttccacaaatcgcgcgtcaactcggcgagtttac 144  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  10113919 caatgttccacaaatcgcgtgtcaactcggcgagtttac 10113881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 31975709 - 31975647
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||| ||||||||| |   ||||||||||||||||||||||| |||| |||||    
T  31975709 taaactcgatttcttgtaaaatcggaaggtttgacgagtttgaccgagttaagactcggtaaa 31975647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 31996305 - 31996251
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacac 214  Q
    |||||||||||| |||| |||||| | | ||||||||||||||||||||||||||    
T  31996305 taaactcgatttttggtgaaatcggaaagtttgacgagtttgaccgagttaacac 31996251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 9038937 - 9038888
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    |||| |||| |||||||||||||||||| ||||| |||||||||||||||    
T  9038937 tactccctccgtccctaaatataggagtcttttgccaaaattgcggagat 9038888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 21199597 - 21199650
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaaca 213  Q
    |||||||||||| |||| |||||| | | |||||||||||||||||||||||||    
T  21199597 taaactcgatttttggtgaaatcggaaagtttgacgagtttgaccgagttaaca 21199650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 3000283 - 3000345
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||| ||||||| |||||||||||   | |||||||||||||| |||||||||||||| ||||    
T  3000283 taaattcgatttatggtaaaatcgggaagtttgacgagtttgatcgagttaacactcaataaa 3000345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 105
Target Start/End: Complemental strand, 22710553 - 22710519
Alignment:
Q  71 taaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||||||| |||||||||||||||||||||    
T  22710553 taaatataggagtcttttgtcaaaattgcggagat 22710519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 2364409 - 2364458
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| |||||||||||||||||| |||||  |||||||| |||||    
T  2364409 tactacctccgtccctaaatataggagtcttttgcaaaaattgcagagat 2364458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 13321068 - 13321117
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||| | |||||||||||||||||  ||||| |||||||||||||||    
T  13321068 tactaccgccgtccctaaatataggagccttttgccaaaattgcggagat 13321117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 22998785 - 22998834
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    |||||||||  |||||||||||| |||  |||||||||||||||||||||    
T  22998785 tactacctccctccctaaatataagagccttttgtcaaaattgcggagat 22998834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 23789619 - 23789570
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    |||||||||  |||||||||||| |||  |||||||||||||||||||||    
T  23789619 tactacctccctccctaaatataagagccttttgtcaaaattgcggagat 23789570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 28980595 - 28980644
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    |||||||||  |||||||||||| ||| |||||| |||||||||||||||    
T  28980595 tactacctccatccctaaatataagagctttttgccaaaattgcggagat 28980644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 7125223 - 7125161
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||    
T  7125223 taaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacactcagtaaa 7125161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 5651245 - 5651183
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    ||||||||||||||||| |||| ||| | ||||||||||||||||||||||||||||||||||    
T  5651245 taaactcgatttctggtgaaattgaaaagtttgacgagtttgaccgagttaacactcagtaaa 5651183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 28623225 - 28623163
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||| | | | ||||||||||||||||||||||||||||||||||    
T  28623225 taaactcgatttctggtaaaattgcaaagtttgacgagtttgaccgagttaacactcagtaaa 28623163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 37798178 - 37798116
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    ||||||| |||||||||||||||||| | |||||||||||||||||||||||||||| |||||    
T  37798178 taaactcaatttctggtaaaatcgaaaagtttgacgagtttgaccgagttaacactcggtaaa 37798116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 2675132 - 2675078
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacac 214  Q
    |||||||||||| |||| |||||||| | ||||||||||||||||||||||||||    
T  2675132 taaactcgatttttggtgaaatcgaaaagtttgacgagtttgaccgagttaacac 2675078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 31657982 - 31657932
Alignment:
Q  55 atactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    |||||||||| ||||||||||||| |||| |||||||||||||||||||||    
T  31657982 atactacctccgtccctaaatatatgagtcttttgtcaaaattgcggagat 31657932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 35784659 - 35784709
Alignment:
Q  55 atactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    |||||||||  |||||||||||||||||| |||||||||||||||||||||    
T  35784659 atactaccttcgtccctaaatataggagtcttttgtcaaaattgcggagat 35784709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 1303317 - 1303366
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| ||||||||||||| |||||||||||||||||| |||||||    
T  1303317 tactacctccgtccctaaatataagagttttttgtcaaaattacggagat 1303366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 13236236 - 13236187
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| ||||||||||| |||||| |||||||||||||||||||||    
T  13236236 tactacctccgtccctaaatacaggagtcttttgtcaaaattgcggagat 13236187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 7125305 - 7125267
Alignment:
Q  106 caatgttccacaaatcgcgcgtcaactcggcgagtttac 144  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  7125305 caatgttccacaaatcgcgtgtcaactcggcgagtttac 7125267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 21238817 - 21238763
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacac 214  Q
    |||||||| ||| ||||||||||| | | ||||||||||||||||||||||||||    
T  21238817 taaactcggtttttggtaaaatcggaaagtttgacgagtttgaccgagttaacac 21238763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 7001599 - 7001550
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| |||||| |||||| |||| |||||||||||||||||||||    
T  7001599 tactacctccgtccctgaatataagagtcttttgtcaaaattgcggagat 7001550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 105
Target Start/End: Original strand, 16284940 - 16284979
Alignment:
Q  66 gtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    |||||||||||||||||| ||||||||||||| |||||||    
T  16284940 gtccctaaatataggagtcttttgtcaaaattacggagat 16284979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 23259876 - 23259927
Alignment:
Q  54 tatactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||||| |||||||||||||| ||| ||||| ||||||| |||||||    
T  23259876 tatactacctccgtccctaaatatagaagtcttttgccaaaattacggagat 23259927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 21069935 - 21069885
Alignment:
Q  55 atactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    |||||||||| || | |||||||| |||| |||||||||||||||||||||    
T  21069935 atactacctccgttcttaaatataagagtcttttgtcaaaattgcggagat 21069885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 33892900 - 33892846
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacac 214  Q
    |||||||||||| || | |||||| | | ||||||||||||||||||||||||||    
T  33892900 taaactcgatttttgatgaaatcggaaagtttgacgagtttgaccgagttaacac 33892846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 37014346 - 37014408
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||| ||| ||||||||||||| |||   ||| |||||||||||||||||||||||| |||||    
T  37014346 taaaatcggtttctggtaaaattgaaaggtttaacgagtttgaccgagttaacactcggtaaa 37014408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 41686854 - 41686904
Alignment:
Q  55 atactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||||||||||||||||||||||  ||||| | ||||| |||||||    
T  41686854 atactacctctgtccctaaatataggagccttttgcccaaattacggagat 41686904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 28623307 - 28623270
Alignment:
Q  106 caatgttccacaaatcgcgcgtcaactcggcgagttta 143  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  28623307 caatgttccacaaatcgcgtgtcaactcagcgagttta 28623270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 29469206 - 29469268
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||    
T  29469206 taaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacactcagtaaa 29469268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 42937471 - 42937409
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||    
T  42937471 taaactcgatttctggtaaaatcgaaaagtttgacgagtttgaccgagttaacactccgtaaa 42937409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 8084252 - 8084314
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||| ||||||||| | | ||||||||||||||||||||||||||||||||||    
T  8084252 taaactcgatttctagtaaaatcggaaagtttgacgagtttgaccgagttaacactcagtaaa 8084314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 32684893 - 32684843
Alignment:
Q  55 atactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  32684893 atactacctccgtccctaaatataggagtcttttgtcaaaattgcggagat 32684843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 3085740 - 3085690
Alignment:
Q  55 atactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||||||||    
T  3085740 atactacatctgtccctaaatataggagccttttgtcaaaattgcggagat 3085690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 23671434 - 23671372
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    ||||||||||||||||| |||||||| | |||||||||||||| | |||||| ||||||||||    
T  23671434 taaactcgatttctggtgaaatcgaaaagtttgacgagtttgagcaagttaagactcagtaaa 23671372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 50517236 - 50517298
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||| | |   |||||||||||||||||||||||||||| |||||    
T  50517236 taaactcgatttctggtaaaattggaaggtttgacgagtttgaccgagttaacactcggtaaa 50517298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 29510126 - 29510064
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    ||||||| |||||||||||||||  |   |||||||||||||||||||||||||||| |||||    
T  29510126 taaactcaatttctggtaaaatcagaaggtttgacgagtttgaccgagttaacactcggtaaa 29510064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 41725605 - 41725667
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||||| |   ||| ||||||||||| |||||||||||| |||||    
T  41725605 taaactcgatttctggtaaaatcggaaggtttaacgagtttgactgagttaacactcggtaaa 41725667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 51967320 - 51967374
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacac 214  Q
    |||||||| ||| |||| |||||||| | ||||||||||||||||||||||||||    
T  51967320 taaactcggtttttggtgaaatcgaaaagtttgacgagtttgaccgagttaacac 51967374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 29509102 - 29509053
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| ||| |||||||||||||||||||| ||||||| |||||||    
T  29509102 tactacctccgtctctaaatataggagttttttgccaaaattacggagat 29509053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 37916283 - 37916343
Alignment:
Q  162 aactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||| ||||||||||||||| |   ||| ||||||||||| ||||||||||||||||||    
T  37916283 aactcggtttctggtaaaatcggaaggtttaacgagtttgactgagttaacactcagtaaa 37916343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 46286752 - 46286808
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactc 216  Q
    |||||||||||||| ||||| ||| |   ||||||||||||||||||||||||||||    
T  46286752 taaactcgatttctagtaaactcggaaggtttgacgagtttgaccgagttaacactc 46286808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 6487378 - 6487324
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacac 214  Q
    |||||||||||| |||| |||||| | | |||||||||||||||||||| |||||    
T  6487378 taaactcgatttttggtgaaatcggaaagtttgacgagtttgaccgagtgaacac 6487324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 7776683 - 7776733
Alignment:
Q  55 atactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    |||| ||||| |||||||||||||||||  ||||| |||||||||||||||    
T  7776683 ataccacctcagtccctaaatataggagccttttgccaaaattgcggagat 7776733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 8084170 - 8084208
Alignment:
Q  106 caatgttccacaaatcgcgcgtcaactcggcgagtttac 144  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  8084170 caatgttccacaaaccgcgtgtcaactcggcgagtttac 8084208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 9972816 - 9972870
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacac 214  Q
    |||||||| ||| |||| |||||| | | ||||||||||||||||||||||||||    
T  9972816 taaactcggtttttggtgaaatcggaaagtttgacgagtttgaccgagttaacac 9972870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 29856008 - 29856070
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||| | |   ||| ||||||||||| |||||||||||| |||||    
T  29856008 taaactcgatttctggtaaaattggaaggtttaacgagtttgactgagttaacactcggtaaa 29856070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 49501242 - 49501180
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||| ||||||||||||||| |   ||| ||||||||||| |||||||||||| |||||    
T  49501242 taaactcggtttctggtaaaatcggaaggtttaacgagtttgacggagttaacactcggtaaa 49501180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 49507307 - 49507245
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||| ||||||||||||||| |   ||| ||||||||||| |||||||||||| |||||    
T  49507307 taaactcggtttctggtaaaatcggaaggtttaacgagtttgacggagttaacactcggtaaa 49507245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 871852 - 871905
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgac-cgagttaac 212  Q
    |||||||||||||||||||||||| |   ||||||||||||||| |||||||||    
T  871852 taaactcgatttctggtaaaatcggaatgtttgacgagtttgactcgagttaac 871905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 6629216 - 6629265
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| ||||||||||||| || |||||||  ||||||||||||||    
T  6629216 tactacctccgtccctaaatatatgatttttttgctaaaattgcggagat 6629265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 21265516 - 21265467
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| |||| ||||||||||||  ||||| |||||||||||||||    
T  21265516 tactacctccgtccttaaatataggagccttttgccaaaattgcggagat 21265467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 26491183 - 26491130
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaaca 213  Q
    |||||||| ||||||||||||||  |   |||||||||||||||||||||||||    
T  26491183 taaactcggtttctggtaaaatcagaaggtttgacgagtttgaccgagttaaca 26491130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 26955392 - 26955433
Alignment:
Q  173 tggtaaaatcgaacaatttgacgagtttgaccgagttaacac 214  Q
    ||||||||||||| | |||| |||||||||||||||||||||    
T  26955392 tggtaaaatcgaaaagtttgtcgagtttgaccgagttaacac 26955433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 29966454 - 29966401
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaaca 213  Q
    |||||||| ||| |||| |||||||| | || ||||||||||||||||||||||    
T  29966454 taaactcggtttttggtgaaatcgaaaagttcgacgagtttgaccgagttaaca 29966401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 35909939 - 35909890
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| |||||||||||||| ||| |||| ||||||| ||||||||    
T  35909939 tactacctccgtccctaaatatagaagtcttttatcaaaatcgcggagat 35909890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 37779955 - 37780004
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| |||||||||||||||||  |||||  ||||||||||||||    
T  37779955 tactacctccgtccctaaatataggagccttttgctaaaattgcggagat 37780004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 23170778 - 23170738
Alignment:
Q  173 tggtaaaatcgaacaatttgacgagtttgaccgagttaaca 213  Q
    |||| |||||||| | |||||||||||||||||||||||||    
T  23170778 tggtgaaatcgaaaagtttgacgagtttgaccgagttaaca 23170738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 23390081 - 23390137
Alignment:
Q  49 aaaattatactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||| |||||||||| |||||||||||||||||  |||||  |||||| |||||||    
T  23390081 aaaataatactacctccgtccctaaatataggagccttttgctaaaattacggagat 23390137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 1243363 - 1243301
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||    
T  1243363 taaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacactcagtaaa 1243301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 4005131 - 4005193
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||    
T  4005131 taaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacactcagtaaa 4005193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 26757679 - 26757741
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||    
T  26757679 taaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacactcagtaaa 26757741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 41353485 - 41353547
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||    
T  41353485 taaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacactcagtaaa 41353547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 51106957 - 51107018
Alignment:
Q  161 aaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    ||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||    
T  51106957 aaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacactcagtaaa 51107018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 8147381 - 8147443
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||| | | | ||||||||||||||||||||||||||||||||||    
T  8147381 taaactcgatttctggtaaaattgcaaagtttgacgagtttgaccgagttaacactcagtaaa 8147443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 9192088 - 9192150
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||||  | | ||||||||||||||||||||||||||||||||||    
T  9192088 taaactcgatttctggtaaaatcagaaagtttgacgagtttgaccgagttaacactcagtaaa 9192150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 11579150 - 11579095
Alignment:
Q  167 gatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    ||||||||||||||||| | | ||||||||||||||||||||||||||||||||||    
T  11579150 gatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacactcagtaaa 11579095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 23893430 - 23893478
Alignment:
Q  49 aaaattatactacctctgtccctaaatataggagttttttgtcaaaatt 97  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||    
T  23893430 aaaattatactatctctgtccctaaatataggagtcttttgtcaaaatt 23893478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 47371632 - 47371570
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||||| |   |||| ||||||||||||||||||||||| |||||    
T  47371632 taaactcgatttctggtaaaatcggaaggtttgccgagtttgaccgagttaacactcggtaaa 47371570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 4279868 - 4279917
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    |||||||||||||||||||||||||||| ||||| ||||||||| |||||    
T  4279868 tactacctctgtccctaaatataggagtcttttgccaaaattgcagagat 4279917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 27479895 - 27479846
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| |||||||||||||||||| ||||||||||||| |||||||    
T  27479895 tactacctccgtccctaaatataggagtcttttgtcaaaattacggagat 27479846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 26757596 - 26757635
Alignment:
Q  105 tcaatgttccacaaatcgcgcgtcaactcggcgagtttac 144  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  26757596 tcaatgttccacaaatcgcgtgtcaactcggcgagtttac 26757635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 1243445 - 1243407
Alignment:
Q  106 caatgttccacaaatcgcgcgtcaactcggcgagtttac 144  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  1243445 caatgttccacaaatcgcgtgtcaactcggcgagtttac 1243407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 3583613 - 3583551
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||| ||||| ||||||||| | | |||||||||||| ||||||||||||||| |||||    
T  3583613 taaactcggtttctagtaaaatcggaaagtttgacgagtttaaccgagttaacactcggtaaa 3583551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 4005049 - 4005087
Alignment:
Q  106 caatgttccacaaatcgcgcgtcaactcggcgagtttac 144  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  4005049 caatgttccacaaatcgcgtgtcaactcggcgagtttac 4005087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 9192006 - 9192044
Alignment:
Q  106 caatgttccacaaatcgcgcgtcaactcggcgagtttac 144  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  9192006 caatgttccacaaatcgcgtgtcaactcggcgagtttac 9192044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 41353403 - 41353441
Alignment:
Q  106 caatgttccacaaatcgcgcgtcaactcggcgagtttac 144  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  41353403 caatgttccacaaatcgcgtgtcaactcggcgagtttac 41353441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 45273058 - 45273120
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||| ||||||||||||||| |   ||||||||||||||| |||||||||||| |||||    
T  45273058 taaactcggtttctggtaaaatcggaaggtttgacgagtttgactgagttaacactcggtaaa 45273120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 49549287 - 49549249
Alignment:
Q  67 tccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  49549287 tccctaaatataggagtcttttgtcaaaattgcggagat 49549249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 51106874 - 51106912
Alignment:
Q  106 caatgttccacaaatcgcgcgtcaactcggcgagtttac 144  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  51106874 caatgttccacaaatcgcgtgtcaactcggcgagtttac 51106912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 11579230 - 11579189
Alignment:
Q  106 caatgttccacaaatcgcgcgtcaactcggcgagtttacgtg 147  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  11579230 caatgttccacaaatcgcatgtcaactcggcgagtttacgtg 11579189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 17484029 - 17483980
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| |||||||||||||||||  ||||| |||||||||||||||    
T  17484029 tactacctccgtccctaaatataggagccttttgccaaaattgcggagat 17483980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 52429184 - 52429135
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| ||||||||||||| ||| |||||| |||||||||||||||    
T  52429184 tactacctccgtccctaaatataagagctttttgccaaaattgcggagat 52429135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 5209423 - 5209363
Alignment:
Q  162 aactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    ||||||||||||||| |||||  | | |||||||||||||| |||||||||||||| ||||    
T  5209423 aactcgatttctggtgaaatcagaaagtttgacgagtttgatcgagttaacactcaataaa 5209363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 8147297 - 8147337
Alignment:
Q  104 atcaatgttccacaaatcgcgcgtcaactcggcgagtttac 144  Q
    ||||||||||||||||||||| |||||||| ||||||||||    
T  8147297 atcaatgttccacaaatcgcgtgtcaactcagcgagtttac 8147337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 35177267 - 35177211
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactc 216  Q
    ||||||||||||||| |||||||| |    |||||||||||||||||||||||||||    
T  35177267 taaactcgatttctgataaaatcggaaggattgacgagtttgaccgagttaacactc 35177211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 49237024 - 49236974
Alignment:
Q  159 ttaaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagtt 209  Q
    |||| |||| |||||||||||||||||   |||||||||||||||||||||    
T  49237024 ttaagctcggtttctggtaaaatcgaaaggtttgacgagtttgaccgagtt 49236974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 49453117 - 49453055
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||| ||||||  |   |||||| ||||||||||||||||||||| |||||    
T  49453117 taaactcgatttctggaaaaatcataaggtttgacaagtttgaccgagttaacactcggtaaa 49453055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 30997040 - 30996993
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggaga 104  Q
    ||||||||| |||||||||||||||||| ||||| ||||||| ||||||    
T  30997040 tactacctc-gtccctaaatataggagtcttttgccaaaattacggaga 30996993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 18899986 - 18899924
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||| ||||||||| | | ||||||||||||||||||||||||||||||||||    
T  18899986 taaactcgatttctagtaaaatcggaaagtttgacgagtttgaccgagttaacactcagtaaa 18899924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 15224273 - 15224333
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagta 220  Q
    ||||||||||||||||| |||||||| | |||||||||||||||||| |||||||||||||    
T  15224273 taaactcgatttctggtgaaatcgaaaagtttgacgagtttgaccgaattaacactcagta 15224333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 30858236 - 30858186
Alignment:
Q  55 atactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    |||||||||| |||||||||||||||||| ||||| |||||||||||||||    
T  30858236 atactacctccgtccctaaatataggagtcttttgccaaaattgcggagat 30858186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 41494362 - 41494411
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| |||||||||||||||||| |||||| ||||||||||||||    
T  41494362 tactacctccgtccctaaatataggagtcttttgttaaaattgcggagat 41494411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 3991816 - 3991870
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacac 214  Q
    |||||||| ||| |||| |||||||| | ||||||||||||||||||||||||||    
T  3991816 taaactcggtttttggtgaaatcgaaaagtttgacgagtttgaccgagttaacac 3991870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 13898519 - 13898573
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacac 214  Q
    |||||||||||| |||| |||||| | | ||||||||||||||||||||||||||    
T  13898519 taaactcgatttttggtgaaatcggaaagtttgacgagtttgaccgagttaacac 13898573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 14039136 - 14039190
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacac 214  Q
    |||||||||||| |||| |||||| | | ||||||||||||||||||||||||||    
T  14039136 taaactcgatttttggtgaaatcggaaagtttgacgagtttgaccgagttaacac 14039190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 18900068 - 18900030
Alignment:
Q  106 caatgttccacaaatcgcgcgtcaactcggcgagtttac 144  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  18900068 caatgttccacaaatcgcgtgtcaactcggcgagtttac 18900030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 40829679 - 40829741
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||| ||||||||||||| |||   |||||||| |||||||||||||||||||| ||||    
T  40829679 taaactcggtttctggtaaaatagaaaggtttgacgaatttgaccgagttaacactcaataaa 40829741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 18727705 - 18727652
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaaca 213  Q
    ||||||||| ||||||||||||| || | |||||||||||| ||||||||||||    
T  18727705 taaactcgaattctggtaaaatcaaaaagtttgacgagtttcaccgagttaaca 18727652  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 31633587 - 31633636
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| |||||||||||||||||| ||||| ||||||| |||||||    
T  31633587 tactacctccgtccctaaatataggagtcttttgccaaaattacggagat 31633636  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 36750624 - 36750673
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| |||||||||||||||||  ||||| |||||||||||||||    
T  36750624 tactacctccgtccctaaatataggagccttttgccaaaattgcggagat 36750673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 41422809 - 41422760
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| |||||||||||||||||  |||||| ||||||||||||||    
T  41422809 tactacctccgtccctaaatataggagccttttgttaaaattgcggagat 41422760  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 43318838 - 43318766
Alignment:
Q  140 tttacgtgctaaaagcgttttaaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaaca 213  Q
    |||| ||||||||| ||| |||| ||| |||| ||||||||||| | | |||||||||||||||||||||||||    
T  43318838 tttatgtgctaaaaacgtgttaa-ctctatttttggtaaaatcggaaagtttgacgagtttgaccgagttaaca 43318766  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 35404377 - 35404321
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactc 216  Q
    |||||||| ||| ||||||||| | | | ||||||||||||||||||||||||||||    
T  35404377 taaactcggtttttggtaaaattggaaagtttgacgagtttgaccgagttaacactc 35404321  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 11153408 - 11153354
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacac 214  Q
    |||||||| ||||||||||||||||    |||| |||||||||||||||||||||    
T  11153408 taaactcggtttctggtaaaatcgagatgtttggcgagtttgaccgagttaacac 11153354  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 21838914 - 21838864
Alignment:
Q  55 atactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||| || ||| |||||||||| ||| |||||||||||||||||||||    
T  21838914 atactacatccgtctctaaatatagaagtcttttgtcaaaattgcggagat 21838864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 38413512 - 38413458
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacac 214  Q
    |||||||| ||| |||| |||||| | | ||||||||||||||||||||||||||    
T  38413512 taaactcggtttttggtgaaatcggaaagtttgacgagtttgaccgagttaacac 38413458  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 9701367 - 9701318
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| || |||||||||| |||  |||||||||||||||||||||    
T  9701367 tactacctccgttcctaaatataagagccttttgtcaaaattgcggagat 9701318  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 38295747 - 38295714
Alignment:
Q  189 tttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||||||||||||||||||||||| |||||    
T  38295747 tttgacgagtttgaccgagttaacactcggtaaa 38295714  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 6028642 - 6028590
Alignment:
Q  53 ttatactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    |||||||||||| ||||||||||||| |||| |||||  |||||| |||||||    
T  6028642 ttatactacctccgtccctaaatataagagtcttttgcaaaaattacggagat 6028590  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 40544630 - 40544590
Alignment:
Q  49 aaaattatactacctctgtccctaaatataggagttttttg 89  Q
    |||||||||||||||| |||||||| ||||||||| |||||    
T  40544630 aaaattatactacctccgtccctaattataggagtcttttg 40544590  T

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Target: scaffold1128 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1128
Description:

Target: scaffold1128; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 962 - 900
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactcagtaaa 222  Q
    |||||||| ||||||||||||||| | | ||||| ||||||||||||||||||||| ||||||    
T  962 taaactcggtttctggtaaaatcggaaagtttgatgagtttgaccgagttaacacttagtaaa 900  T

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Target: scaffold0421 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 1742 - 1796
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacac 214  Q
    |||||||||||| |||| |||||| | | ||||||||||||||||||||||||||    
T  1742 taaactcgatttttggtgaaatcggaaagtttgacgagtttgaccgagttaacac 1796  T

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Target: scaffold0263 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 539 - 501
Alignment:
Q  106 caatgttccacaaatcgcgcgtcaactcggcgagtttac 144  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  539 caatgttccacaaatcgcgtgtcaactcggcgagtttac 501  T

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Target: scaffold0013 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 89323 - 89379
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacactc 216  Q
    |||||||||||||||||||||| | |   |||||||||||||| |||||||||||||    
T  89323 taaactcgatttctggtaaaattggaaggtttgacgagtttgatcgagttaacactc 89379  T

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Target: scaffold0383 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 16739 - 16684
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacact 215  Q
    |||||||| |||||||||||||||||   ||| ||||||||||| |||||||||||    
T  16739 taaactcggtttctggtaaaatcgaaaggtttaacgagtttgactgagttaacact 16684  T

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Target: scaffold0152 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 20975 - 20920
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacact 215  Q
    |||||||| |||||||||||||||||   ||| ||||||||||| |||||||||||    
T  20975 taaactcggtttctggtaaaatcgaaaggtttaacgagtttgactgagttaacact 20920  T

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Target: scaffold0152; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 28826 - 28881
Alignment:
Q  160 taaactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacact 215  Q
    |||||||| |||||||||||||||||   ||| ||||||||||| |||||||||||    
T  28826 taaactcggtttctggtaaaatcgaaaggtttaacgagtttgactgagttaacact 28881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 140 - 89
Alignment:
Q  54 tatactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||||| |||| ||||||||||||  ||||| |||||||||||||||    
T  140 tatactacctccgtccttaaatataggagccttttgccaaaattgcggagat 89  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 11401 - 11451
Alignment:
Q  55 atactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    |||||||||| ||| |||||||||||||  ||||||||||||| |||||||    
T  11401 atactacctccgtctctaaatataggagcattttgtcaaaattacggagat 11451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 17761 - 17712
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    ||||||||| |||| ||||||||||||  ||||| |||||||||||||||    
T  17761 tactacctccgtccttaaatataggagcattttgccaaaattgcggagat 17712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 39343 - 39290
Alignment:
Q  162 aactcgatttctggtaaaatcgaacaatttgacgagtttgaccgagttaacact 215  Q
    |||||| |||||||||||||||||   ||||||||||||||| |||||| ||||    
T  39343 aactcggtttctggtaaaatcgaaaggtttgacgagtttgactgagttagcact 39290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 246752 - 246703
Alignment:
Q  56 tactacctctgtccctaaatataggagttttttgtcaaaattgcggagat 105  Q
    |||| |||| |||||||||||||||||  ||||| |||||||||||||||    
T  246752 tacttcctccgtccctaaatataggagccttttgccaaaattgcggagat 246703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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