View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0752_low_22 (Length: 251)

Name: NF0752_low_22
Description: NF0752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0752_low_22
NF0752_low_22
[»] chr3 (3 HSPs)
chr3 (10-222)||(18388323-18388535)
chr3 (1-55)||(36243410-36243464)
chr3 (1-69)||(29430606-29430674)
[»] chr7 (4 HSPs)
chr7 (41-136)||(25426962-25427057)
chr7 (1-32)||(13783080-13783111)
chr7 (1-31)||(42418250-42418280)
chr7 (10-62)||(15134458-15134510)
[»] chr5 (10 HSPs)
chr5 (9-121)||(1514403-1514517)
chr5 (1-86)||(4908990-4909075)
chr5 (1-57)||(25744713-25744769)
chr5 (1-55)||(6051757-6051811)
chr5 (1-32)||(25746806-25746837)
chr5 (1-64)||(27735083-27735146)
chr5 (1-31)||(209520-209550)
chr5 (1-31)||(6052631-6052661)
chr5 (1-31)||(33573242-33573272)
chr5 (1-63)||(33574117-33574179)
[»] chr8 (1 HSPs)
chr8 (1-55)||(5780710-5780764)
[»] scaffold0126 (1 HSPs)
scaffold0126 (1-64)||(34510-34573)
[»] chr4 (7 HSPs)
chr4 (12-55)||(52304510-52304553)
chr4 (1-55)||(26341380-26341434)
chr4 (1-32)||(50303395-50303426)
chr4 (1-55)||(43460584-43460638)
chr4 (1-31)||(43461456-43461486)
chr4 (1-31)||(50185267-50185297)
chr4 (12-64)||(49480611-49480663)
[»] chr1 (4 HSPs)
chr1 (15-86)||(17173412-17173483)
chr1 (1-91)||(19534056-19534146)
chr1 (5-64)||(19940336-19940394)
chr1 (13-55)||(25724773-25724815)
[»] chr6 (2 HSPs)
chr6 (1-55)||(24063854-24063908)
chr6 (11-64)||(21350319-21350372)
[»] chr2 (2 HSPs)
chr2 (1-29)||(25617829-25617857)
chr2 (1-29)||(29647455-29647483)


Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 18388535 - 18388323
Alignment:
Q  10 ggggatgtatcaaatgagaggagatgtttttgtgagagggtgagagcattaaatagtagccacaagattaaaacaaacggttgaaatattatttttctta 109  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  18388535 ggggatgtatcaaatgagaggagatgttattgtgagaggatgagagcattaaatagtagccacaagattaaaacaaaaggttgagatattatttttctta 18388436  T
Q  110 agctgcaccttcaacccttcgccttacatgcacaattatgtccgttccttcctatcttctctctcacacatgaacatgccatcgattctatccccattca 209  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||    
T  18388435 agctgcaccttcaacccttcgccttacatgcacaattatgtctgttccttcctatcttctctctcacacatgaaaatgccatcgattctatccctatcca 18388336  T
Q  210 ttgtaaacaaata 222  Q
    |||||||||||||    
T  18388335 ttgtaaacaaata 18388323  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 36243410 - 36243464
Alignment:
Q  1 atatatataggggatgtatcaaatgagaggagatgtttttgtgagagggtgagag 55  Q
    |||||||||||||||||||||||||||||||| |||| |||| ||||||||||||    
T  36243410 atatatataggggatgtatcaaatgagaggagctgttattgtaagagggtgagag 36243464  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 29430674 - 29430606
Alignment:
Q  1 atatatataggggatgtatcaaatgagaggagatgtttttgtgagagggtgagagcattaaatagtagc 69  Q
    ||||||||||||||||| |||||||||||||  | || |  ||||||| |||||| |||||||| ||||    
T  29430674 atatatataggggatgtttcaaatgagaggatgtcttatgatgagaggatgagagtattaaatattagc 29430606  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 136
Target Start/End: Original strand, 25426962 - 25427057
Alignment:
Q  41 gtgagagggtgagagcattaaatagtagccacaagattaaaacaaacggttgaaatattatttttcttaagctgcaccttcaacccttcgccttac 136  Q
    |||||||||||||||||||||||| |||||||  |||| ||| |||||||||| ||||| | | | |||||||||||||||||||  |||||||||    
T  25426962 gtgagagggtgagagcattaaataatagccacttgattgaaataaacggttgagatattttgtgttttaagctgcaccttcaaccactcgccttac 25427057  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 13783111 - 13783080
Alignment:
Q  1 atatatataggggatgtatcaaatgagaggag 32  Q
    ||||||||||||||||||||||||||||||||    
T  13783111 atatatataggggatgtatcaaatgagaggag 13783080  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 42418280 - 42418250
Alignment:
Q  1 atatatataggggatgtatcaaatgagagga 31  Q
    |||||||||||||||||||||||||||||||    
T  42418280 atatatataggggatgtatcaaatgagagga 42418250  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 15134510 - 15134458
Alignment:
Q  10 ggggatgtatcaaatgagaggagatgtttttgtgagagggtgagagcattaaa 62  Q
    |||||||| ||||||||||||||  | | ||||||||||||||||||| ||||    
T  15134510 ggggatgtttcaaatgagaggagtggatattgtgagagggtgagagcactaaa 15134458  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 1514517 - 1514403
Alignment:
Q  9 aggggatgtatcaaatgagaggagatgtttttgtgagagggtgagagcattaaatagtagccacaagattaaaacaaacggtt--gaaatattatttttc 106  Q
    |||||||||||||| ||||| || || || ||||||||||||||||||||||||||  ||||| |||| ||||| ||||| ||  || |||||| |||||    
T  1514517 aggggatgtatcaagtgagatgaaattttattgtgagagggtgagagcattaaatatcagccataagaataaaataaacgattgagagatattacttttc 1514418  T
Q  107 ttaagctgcaccttc 121  Q
    ||||| |||||||||    
T  1514417 ttaagttgcaccttc 1514403  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 4909075 - 4908990
Alignment:
Q  1 atatatataggggatgtatcaaatgagaggagatgtttttgtgagagggtgagagcattaaatagtagccacaagattaaaacaaa 86  Q
    ||||||| ||||| ||||||||||||||| | || || || ||||||||||||||||||||||| || ||||  ||||||||||||    
T  4909075 atatatagagggggtgtatcaaatgagagcatatcttattatgagagggtgagagcattaaatattaaccacttgattaaaacaaa 4908990  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 25744713 - 25744769
Alignment:
Q  1 atatatataggggatgtatcaaatgagaggagatgtttttgtgagagggtgagagca 57  Q
    ||||||||| ||||||| ||||||||||||||  ||| |||||||||||||||||||    
T  25744713 atatatatatgggatgtttcaaatgagaggagtggttattgtgagagggtgagagca 25744769  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 6051757 - 6051811
Alignment:
Q  1 atatatataggggatgtatcaaatgagaggagatgtttttgtgagagggtgagag 55  Q
    |||||||||||||||||||||||||||||||  |||| |  ||||||||||||||    
T  6051757 atatatataggggatgtatcaaatgagaggaagtgttataatgagagggtgagag 6051811  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 25746837 - 25746806
Alignment:
Q  1 atatatataggggatgtatcaaatgagaggag 32  Q
    ||||||||||||||||||||||||||||||||    
T  25746837 atatatataggggatgtatcaaatgagaggag 25746806  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 27735146 - 27735083
Alignment:
Q  1 atatatataggggatgtatcaaatgagaggagatgtttttgtgagagggtgagagcattaaata 64  Q
    ||||||||  |||||||||||||||||| |||  ||| ||||||||||||||||| | ||||||    
T  27735146 atatatatgtgggatgtatcaaatgagatgagtggttattgtgagagggtgagaggagtaaata 27735083  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 209520 - 209550
Alignment:
Q  1 atatatataggggatgtatcaaatgagagga 31  Q
    |||||||||||||||||||||||||||||||    
T  209520 atatatataggggatgtatcaaatgagagga 209550  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 6052661 - 6052631
Alignment:
Q  1 atatatataggggatgtatcaaatgagagga 31  Q
    |||||||||||||||||||||||||||||||    
T  6052661 atatatataggggatgtatcaaatgagagga 6052631  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 33573242 - 33573272
Alignment:
Q  1 atatatataggggatgtatcaaatgagagga 31  Q
    |||||||||||||||||||||||||||||||    
T  33573242 atatatataggggatgtatcaaatgagagga 33573272  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 33574117 - 33574179
Alignment:
Q  1 atatatataggggatgtatcaaatgagaggagatgtttttgtgagagggtgagagcattaaat 63  Q
    |||||||||||||||||||||| |||||||| || ||    |||||||||||||| |||||||    
T  33574117 atatatataggggatgtatcaagtgagaggacattttagaatgagagggtgagaggattaaat 33574179  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 5780764 - 5780710
Alignment:
Q  1 atatatataggggatgtatcaaatgagaggagatgtttttgtgagagggtgagag 55  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||    
T  5780764 atatatataggggatgtatcaaatgagaggacatgttattgtgagaggatgagag 5780710  T

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Target: scaffold0126 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 34573 - 34510
Alignment:
Q  1 atatatataggggatgtatcaaatgagaggagatgtttttgtgagagggtgagagcattaaata 64  Q
    ||||||||| ||||||||| ||||||||||||  ||| ||||||||||||||||| | ||||||    
T  34573 atatatatatgggatgtattaaatgagaggagtggttattgtgagagggtgagaggagtaaata 34510  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 52304510 - 52304553
Alignment:
Q  12 ggatgtatcaaatgagaggagatgtttttgtgagagggtgagag 55  Q
    ||||||||||||||||||||| |||| |||||||||||||||||    
T  52304510 ggatgtatcaaatgagaggagttgttattgtgagagggtgagag 52304553  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 26341434 - 26341380
Alignment:
Q  1 atatatataggggatgtatcaaatgagaggagatgtttttgtgagagggtgagag 55  Q
    |||||||||||||||||||||||||||||||  |||| |  ||||||||||||||    
T  26341434 atatatataggggatgtatcaaatgagaggaagtgttataatgagagggtgagag 26341380  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 50303426 - 50303395
Alignment:
Q  1 atatatataggggatgtatcaaatgagaggag 32  Q
    ||||||||||||||||||||||||||||||||    
T  50303426 atatatataggggatgtatcaaatgagaggag 50303395  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 43460584 - 43460638
Alignment:
Q  1 atatatataggggatgtatcaaatgagaggagatgtttttgtgagagggtgagag 55  Q
    ||||||||| |||||||||||||||||||||  |||| |  ||||||||||||||    
T  43460584 atatatatatgggatgtatcaaatgagaggaagtgttataatgagagggtgagag 43460638  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 43461486 - 43461456
Alignment:
Q  1 atatatataggggatgtatcaaatgagagga 31  Q
    |||||||||||||||||||||||||||||||    
T  43461486 atatatataggggatgtatcaaatgagagga 43461456  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 50185267 - 50185297
Alignment:
Q  1 atatatataggggatgtatcaaatgagagga 31  Q
    |||||||||||||||||||||||||||||||    
T  50185267 atatatataggggatgtatcaaatgagagga 50185297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 49480663 - 49480611
Alignment:
Q  12 ggatgtatcaaatgagaggagatgtttttgtgagagggtgagagcattaaata 64  Q
    |||||||| ||||||||||||  ||| ||||||||||||||||| | ||||||    
T  49480663 ggatgtattaaatgagaggagtggttattgtgagagggtgagagtactaaata 49480611  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 17173483 - 17173412
Alignment:
Q  15 tgtatcaaatgagaggagatgtttttgtgagagggtgagagcattaaatagtagccacaagattaaaacaaa 86  Q
    ||||||||||||||| | || || || ||||||||||||||||||||||| || ||||  ||||||||||||    
T  17173483 tgtatcaaatgagagcatatcttattatgagagggtgagagcattaaatattaaccacttgattaaaacaaa 17173412  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 19534056 - 19534146
Alignment:
Q  1 atatatataggggatgtatcaaatgagaggagatgtttttgtgagagggtgagagcattaaatagtagccacaagattaaaacaaacggtt 91  Q
    ||||||||||||||||| ||||||||||||||   || || |||||||||||||| | |||||| || |||  ||||| |||| |||||||    
T  19534056 atatatataggggatgtttcaaatgagaggagtgattattatgagagggtgagaggagtaaataataaccatcagatttaaaccaacggtt 19534146  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 19940336 - 19940394
Alignment:
Q  5 atataggggatgtatcaaatgagaggagatgtttttgtgagagggtgagagcattaaata 64  Q
    ||||| ||||||||||||||||||| || |||| | |||||| |||||||||||||||||    
T  19940336 atatatgggatgtatcaaatgagagtaggtgttatcgtgaga-ggtgagagcattaaata 19940394  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 25724815 - 25724773
Alignment:
Q  13 gatgtatcaaatgagaggagatgtttttgtgagagggtgagag 55  Q
    ||||||||||||||||||| ||||| |||||||||| ||||||    
T  25724815 gatgtatcaaatgagaggacatgttattgtgagaggatgagag 25724773  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24063854 - 24063908
Alignment:
Q  1 atatatataggggatgtatcaaatgagaggagatgtttttgtgagagggtgagag 55  Q
    |||||||||||||||||||||||||||||||  |||| |  ||||||||||||||    
T  24063854 atatatataggggatgtatcaaatgagaggaagtgttataatgagagggtgagag 24063908  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 21350319 - 21350372
Alignment:
Q  11 gggatgtatcaaatgagaggagatgtttttgtgagagggtgagagcattaaata 64  Q
    ||||||||||||||| ||||||  ||| || |||||||||||||||| ||||||    
T  21350319 gggatgtatcaaatgcgaggagtggttattatgagagggtgagagcactaaata 21350372  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 25617857 - 25617829
Alignment:
Q  1 atatatataggggatgtatcaaatgagag 29  Q
    |||||||||||||||||||||||||||||    
T  25617857 atatatataggggatgtatcaaatgagag 25617829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 29647483 - 29647455
Alignment:
Q  1 atatatataggggatgtatcaaatgagag 29  Q
    |||||||||||||||||||||||||||||    
T  29647483 atatatataggggatgtatcaaatgagag 29647455  T

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