View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0752_low_25 (Length: 236)

Name: NF0752_low_25
Description: NF0752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0752_low_25
NF0752_low_25
[»] chr4 (11 HSPs)
chr4 (13-104)||(3817472-3817563)
chr4 (13-104)||(3919901-3919992)
chr4 (14-104)||(3933126-3933216)
chr4 (14-94)||(3809902-3809982)
chr4 (14-98)||(3986877-3986961)
chr4 (31-104)||(4009872-4009945)
chr4 (21-104)||(4002175-4002258)
chr4 (31-104)||(4218519-4218592)
chr4 (20-104)||(3801462-3801546)
chr4 (14-104)||(4025102-4025192)
chr4 (14-59)||(3954565-3954610)
[»] chr5 (1 HSPs)
chr5 (14-104)||(13397826-13397916)
[»] chr8 (3 HSPs)
chr8 (23-62)||(7075417-7075456)
chr8 (26-62)||(7023411-7023447)
chr8 (25-59)||(7036508-7036542)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 3817563 - 3817472
Alignment:
Q  13 aagagacggattagccgcatgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctagagatgttatttggaactctcgattg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  3817563 aagagacggattagccgcatgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctcgagatgttatttggaactcttgattg 3817472  T

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Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 3919901 - 3919992
Alignment:
Q  13 aagagacggattagccgcatgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctagagatgttatttggaactctcgattg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  3919901 aagagacggattagccgcatgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctcgagatgttatttggaactcttgattg 3919992  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 3933126 - 3933216
Alignment:
Q  14 agagacggattagccgcatgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctagagatgttatttggaactctcgattg 104  Q
    ||||||||||  |||||||||| |||||||| ||||||||||||||||| || ||||||| ||||||||||||||||||| |||| |||||    
T  3933126 agagacggatcggccgcatgaaagttcttattgttcttgatgatgtcaatgaaacagatctgctagagatgttatttggatctcttgattg 3933216  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 3809982 - 3809902
Alignment:
Q  14 agagacggattagccgcatgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctagagatgttatttggaa 94  Q
    |||| |||||| ||||||||||||||||||||||||||||||| |||||||  ||||||||||| || |  ||||||||||    
T  3809982 agaggcggattggccgcatgaaggttcttatcgttcttgatgacgtcaagggtacagatcagctggaaaaattatttggaa 3809902  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 3986961 - 3986877
Alignment:
Q  14 agagacggattagccgcatgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctagagatgttatttggaactct 98  Q
    ||||||| ||| | |||||||||||||||||| ||||||||||||| |||||   ||||||||||||||||||||| | ||||||    
T  3986961 agagacgaattggacgcatgaaggttcttatcattcttgatgatgttaaggacgaagatcagctagagatgttattcgaaactct 3986877  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 4009945 - 4009872
Alignment:
Q  31 atgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctagagatgttatttggaactctcgattg 104  Q
    |||||||||||||| |||||||||||||| |||||   || ||||||||||||||||||| ||||||| |||||    
T  4009945 atgaaggttcttattgttcttgatgatgttaaggaagaaggtcagctagagatgttatttagaactcttgattg 4009872  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 4002258 - 4002175
Alignment:
Q  21 gattagccgcatgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctagagatgttatttggaactctcgattg 104  Q
    |||| |||| |||||||||||||| |||||||||||||| |||||   || |||  |||||||||||||||||||||| |||||    
T  4002258 gattggccgtatgaaggttcttattgttcttgatgatgttaaggaagaaggtcaaatagagatgttatttggaactcttgattg 4002175  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 4218592 - 4218519
Alignment:
Q  31 atgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctagagatgttatttggaactctcgattg 104  Q
    |||||||||||||| |||||||||||| | |||||   || || |||||||||||||||||||||||| |||||    
T  4218592 atgaaggttcttattgttcttgatgatattaaggaagaaggtctgctagagatgttatttggaactcttgattg 4218519  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 3801546 - 3801462
Alignment:
Q  20 ggattagccgcatgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctagagatgttatttggaactctcgattg 104  Q
    ||||| |||| |||||||||||||| | |||||||||| | |||||   || || |||||||||||||||||||||||| |||||    
T  3801546 ggattggccgtatgaaggttcttattgatcttgatgatattaaggaagaaggtctgctagagatgttatttggaactcttgattg 3801462  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 4025192 - 4025102
Alignment:
Q  14 agagacggattagccgcatgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctagagatgttatttggaactctcgattg 104  Q
    ||||| ||||| |||| |||||||| ||||| ||||||||||| || |||||   || |||| ||||||||||||||||||| || |||||    
T  4025192 agagaaggattggccgtatgaaggtccttattgttcttgatgacgttaaggaagaaggtcagatagagatgttatttggaacacttgattg 4025102  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 3954565 - 3954610
Alignment:
Q  14 agagacggattagccgcatgaaggttcttatcgttcttgatgatgt 59  Q
    ||||| ||||| |||| |||||||||||||| ||||||||||||||    
T  3954565 agagaaggattggccgtatgaaggttcttattgttcttgatgatgt 3954610  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 13397916 - 13397826
Alignment:
Q  14 agagacggattagccgcatgaaggttcttatcgttcttgatgatgtcaaggagacagatcagctagagatgttatttggaactctcgattg 104  Q
    ||||| ||||| |||  |||||||||||||| |||||||||||||| | |||   || |||||| |||||||||||||||||||| |||||    
T  13397916 agagaaggattggccatatgaaggttcttattgttcttgatgatgttacggaagaaggtcagctggagatgttatttggaactcttgattg 13397826  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 7075456 - 7075417
Alignment:
Q  23 ttagccgcatgaaggttcttatcgttcttgatgatgtcaa 62  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  7075456 ttagccgcatgaaggttcttattgttcttgatgatgtcaa 7075417  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 7023411 - 7023447
Alignment:
Q  26 gccgcatgaaggttcttatcgttcttgatgatgtcaa 62  Q
    ||||||||||||||||||| |||||||||||||||||    
T  7023411 gccgcatgaaggttcttattgttcttgatgatgtcaa 7023447  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 7036508 - 7036542
Alignment:
Q  25 agccgcatgaaggttcttatcgttcttgatgatgt 59  Q
    |||||||||||||||||||| ||||||||||||||    
T  7036508 agccgcatgaaggttcttattgttcttgatgatgt 7036542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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