View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0752_low_4 (Length: 486)

Name: NF0752_low_4
Description: NF0752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0752_low_4
NF0752_low_4
[»] chr5 (1 HSPs)
chr5 (30-471)||(1449943-1450392)


Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 30 - 471
Target Start/End: Complemental strand, 1450392 - 1449943
Alignment:
Q  30 acaaatactttgatgctcaagtcagtgagagaatgtgtttctctactttcaaatatgattattcaattcaagggtgatttttaactacttttcttattta 129  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1450392 acaaatactttgatgctcaggtcagtgagagaatgggtttctctactttcaaatatgattattcaattcaatggtgatttttaactacttttcttattta 1450293  T
Q  130 attgtatcaacttttcttgaaaattataggttttcctttttaatagggcattacctctgnnnnnnnnnn--------ctacattaatttttcatcttaat 221  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||| |||||||||||||||||||    
T  1450292 atcgtatcaacttttcttgaaaattataggttttcctttttaatagggcattacctctgttttttttttttttttttctatattaatttttcatcttaat 1450193  T
Q  222 tatacaaatattttacaagcacaaggaaccacagaaaagctaaggcaattggcttaaaactacaacggagcagtttgtacataaaactatttcttggatt 321  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  1450192 tatacaaacattttacaagcacaaggaaccacagaaaagctaaggcaattggcttaaaactacaatggagcagtttgtacataaaactattgcttggatt 1450093  T
Q  322 gtctttatatcttgaatttatcaaaacataaattattgctgaaacctaaatatacaaatgaacaaataaggaagatatatcagcaataaaagaatgataa 421  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1450092 gtctttatatcttgaatttatgaaaacataaattattgctgaaacctaaatatacaaatgaacaaataaggaagatatatcagcaataaaagaatgataa 1449993  T
Q  422 agcttctatatatcttctaagacatttaggtggagctttctagctttgct 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1449992 agcttctatatatcttctaagacatttaggtggagctttctagctttgct 1449943  T

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