View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0752_low_5 (Length: 459)
Name: NF0752_low_5
Description: NF0752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0752_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 37 - 432
Target Start/End: Complemental strand, 4205786 - 4205389
Alignment:
| Q |
37 |
tactggtgtttaggtcaatccaaatttgttggttcaaattcaaatctatattggttggtttcaccttcatccattcaattattttttccaataatgtttt |
136 |
Q |
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| T |
4205786 |
tactggtgtttaggtcaatccaaatttgttggttcaaattcaaatctatattggttggtttccccttcatccattcaattattttttccaataatgtttt |
4205687 |
T |
|
| Q |
137 |
gtttacttgtgaaatcattttatcttattatatagaaatgatgtatagacaagcacttatgtgataatcacttatcttacaagccttaaattaagttgtt |
236 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||| |
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| T |
4205686 |
gtttacttgtgaattcattttatcttattatatagaaatgatgtatagacaagcacttatatgataatgacttaccttacaagccttaaattaagttgtt |
4205587 |
T |
|
| Q |
237 |
tatcgaaacataccctatatatactcacacataatcac--atgtaattggcttgtggatgacatatggtttttctttttcactaggttgaaaaatttgaa |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4205586 |
tatcgaaacataccctatatatactcacacataatcacatatgtaattggcttgtggatgacatatggtttttctttttcactaggttgaaaaatttgaa |
4205487 |
T |
|
| Q |
335 |
gcctttcaagatgttattgactagtaatcctgaaaaaacaatagcactcaaccgaaagattcatgacggcaatcttgttattgtttacgtaaaacatg |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4205486 |
gcctttcaagatgttattgactagtaatcctgaaaaaacaatagcattcaaccgaaagattcatgacggcaatcttgttattgtttacgtaaaacatg |
4205389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 32634281 - 32634225
Alignment:
| Q |
190 |
cacttatgtgataatcacttatcttacaagccttaaattaagttgtttatcgaaaca |
246 |
Q |
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|||||||||||||| | ||||| || |||| ||||||||||||||||||| ||||| |
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| T |
32634281 |
cacttatgtgataaacccttatggtataagcgttaaattaagttgtttatccaaaca |
32634225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 23999103 - 23999039
Alignment:
| Q |
180 |
tatagacaagcacttatgtgataatcacttatcttacaagccttaaattaagttgtttatcgaaa |
244 |
Q |
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|||| |||||||||||| |||||| | ||||| || |||| || |||||||||||||||||||| |
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| T |
23999103 |
tatacacaagcacttatatgataagcccttattctataagcatttaattaagttgtttatcgaaa |
23999039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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