View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0752_low_7 (Length: 444)
Name: NF0752_low_7
Description: NF0752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0752_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 122 - 426
Target Start/End: Original strand, 7640010 - 7640312
Alignment:
| Q |
122 |
aagggattcaatttattcatctaactttattcccaaattaaatggcttcacctagttagaatgccaagactagtttattgagcatagacgacattgtgaa |
221 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7640010 |
aagggattcaaaatattcatctaactttattcccaaattaaatggcttcacctagttagaatgccaagactagtttattgagcatagacgacattgtgaa |
7640109 |
T |
|
| Q |
222 |
tggaatcagtttatatatagatattattgcaaattttgcttccctgaagtcgaattctttaccatgtagtgagattttatagaaaataagcttgaagttt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7640110 |
tggaatcagtttatatatagatattattgcaaattttgtttccctgaagtcgaattctt--ccatgtagtgagattttatagaaaataagcttgaagttt |
7640207 |
T |
|
| Q |
322 |
gtagaagtgtatatttttaagcatgcatatgaagtgtaggaaatgtttgtgtagtttgatnnnnnnntccatctgccttttagaggataaagcaagatca |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||| | |
|
|
| T |
7640208 |
gtagaagtgtatatttttaagcatgcatatgaagtgtaggaaatgtttgtgtagtttgagaaaaaaatccatttgccatttagaggataaagcaagataa |
7640307 |
T |
|
| Q |
422 |
actgc |
426 |
Q |
| |
|
||||| |
|
|
| T |
7640308 |
actgc |
7640312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 7639898 - 7639980
Alignment:
| Q |
1 |
atataacaacttatatcgataatatcagaagccagttgcaagctgtatgccccgaaagctgtctcatgacatttcagtagaca |
83 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7639898 |
atataacaacttatctcgataatatcagaagccagttgcaagctgtatgccccgaaagctgtctcatgacatttcagtagaca |
7639980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 7633288 - 7633379
Alignment:
| Q |
156 |
aaattaaatggcttcacctagttagaatgccaagactagtttattgagcatagacgacattgtgaatggaatcagtttatatatagatattattg |
250 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||| ||||||| ||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
7633288 |
aaattaaatggcttcacctagttggaatgccaatactagtttatggagcata---cacattctgaatggattcagtttatatatagatattattg |
7633379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 7633198 - 7633263
Alignment:
| Q |
18 |
gataatatcagaagccagttgcaagctgtatgccccgaaagctgtctcatgacatttcagtagaca |
83 |
Q |
| |
|
|||||||||| |||||||||| |||||||| |||| ||||||||||||||||||||| ||||||| |
|
|
| T |
7633198 |
gataatatcaaaagccagttggaagctgtagtccccaaaagctgtctcatgacatttctgtagaca |
7633263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3024 times since January 2019
Visitors: 4805