View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0752_low_8 (Length: 429)
Name: NF0752_low_8
Description: NF0752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0752_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 32 - 408
Target Start/End: Complemental strand, 11860056 - 11859671
Alignment:
| Q |
32 |
catcacatccatggtgatgttttcgttaccagtgatttcttgcgttgcgagtttatgcatcaaccgattcattctatataagtagttgttc--------- |
122 |
Q |
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||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||| ||| |||||||| |
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| T |
11860056 |
catcacatccacggtgatgttttcgttaccagcgatttcttgccttgcgagtttatgcatcaacggattcattctatacaagcagttgttcatattgttc |
11859957 |
T |
|
| Q |
123 |
ctcacaacaccgcagtactgatggtggtcactttcttttttcgctttatggaaaaccagaggaacgaagtcttcgaaacaagcttgaccaaattgttgtt |
222 |
Q |
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|||||||||||||||||| | ||| ||||||||||| || ||||| ||||||||||| |||||| ||||||| |||||||||||||||||||||||||| |
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| T |
11859956 |
ctcacaacaccgcagtaccggaggtagtcactttcttcttccgcttgatggaaaaccaaaggaacaaagtctttgaaacaagcttgaccaaattgttgtt |
11859857 |
T |
|
| Q |
223 |
ctgggttgacaagaaacccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataa |
322 |
Q |
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|||| |||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11859856 |
ctggattgataagaaacccttcagccgtccagagttgaatcaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcgaagcataa |
11859757 |
T |
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| Q |
323 |
cttctgataagtgggaaaattgtcgtaatagataaacttaagcatttccattgcttctggaatccagttgtcaccaccaccaccac |
408 |
Q |
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| T |
11859756 |
cttctgataagtgggaaggttgtcgtaatagataaacttaagcgtttctaatgctttcggaatccagttgtcaccacgaccaccac |
11859671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 32 - 416
Target Start/End: Complemental strand, 11827921 - 11827528
Alignment:
| Q |
32 |
catcacatccatggtgatgttttcgttaccagtgatttcttgcgttgcgagtttatgcatcaaccgattcattctatataagtagttgttc--------- |
122 |
Q |
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| T |
11827921 |
catcacatccacggtgatgttttcgtcaccagcaatttcttgtcttgcgagtttatgcattaaccgattcattctatataagtagttgttcatgttgttc |
11827822 |
T |
|
| Q |
123 |
ctcacaacaccgcagtactgatggtggtcactttcttttttcgctttatggaaaaccagaggaacgaagtcttcgaaacaagcttgaccaaattgttgtt |
222 |
Q |
| |
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||||||||||||||||||| |||||||||||||||| || ||||| ||||||||||| |||||| ||||||||||||||||| |||||||||||||||| |
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| T |
11827821 |
ctcacaacaccgcagtacttctggtggtcactttcttcttccgcttgatggaaaaccaaaggaacaaagtcttcgaaacaagcatgaccaaattgttgtt |
11827722 |
T |
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| Q |
223 |
ctgggttgacaagaaacccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataa |
322 |
Q |
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|||| |||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11827721 |
ctggattgataagaaacccttcaccagtccagagttgaatcaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataa |
11827622 |
T |
|
| Q |
323 |
cttctgataagtgggaaaattgtcgtaatagataaacttaagcatttccattgcttctggaatccagttgtcaccaccaccaccactttgcttc |
416 |
Q |
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|||||||||||||||| || |||||||||||||| ||| | | |||| | |||||| ||||||| | ||||||||| ||||||| |||||| |
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| T |
11827621 |
tttctgataagtgggaagatcgtcgtaatagataagcttcaccttttctagtgcttcccgaatccattcttcaccaccaacaccactatgcttc |
11827528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 234 - 356
Target Start/End: Complemental strand, 12038604 - 12038482
Alignment:
| Q |
234 |
agaaacccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataacttctgataag |
333 |
Q |
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||||| |||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
12038604 |
agaaatccttcagccgtccaaagttgaattaatctctcggcatcaattaaataatcttctggaaacaatgaacaatatgcaaagcacaacttctgatacg |
12038505 |
T |
|
| Q |
334 |
tgggaaaattgtcgtaatagata |
356 |
Q |
| |
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|||||| || |||||||||||| |
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| T |
12038504 |
tgggaagatcttcgtaatagata |
12038482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 171 - 325
Target Start/End: Original strand, 11902616 - 11902770
Alignment:
| Q |
171 |
tggaaaaccagaggaacgaagtcttcgaaacaagcttgaccaaattgttgttctgggttgacaagaaacccttcagcagtccagagttgaattaatctct |
270 |
Q |
| |
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|||||||||| ||||| ||||| | |||||||| | ||| ||||||||||| ||| || ||||| ||||||||||||||||||| ||||||||||| |
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| T |
11902616 |
tggaaaaccaacggaacaaagtcattgaaacaaggtcgacaaaattgttgttgtggaatggtgagaaatccttcagcagtccagagttcaattaatctct |
11902715 |
T |
|
| Q |
271 |
ctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataactt |
325 |
Q |
| |
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| |||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
11902716 |
cagcatcaatcaaataatctcttggaaacaatgaacaatatgcaaaacataactt |
11902770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 11731508 - 11731429
Alignment:
| Q |
240 |
ccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagca |
319 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| ||||||||||||| || ||||||||||||||||||| |||||||||| |
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| T |
11731508 |
ccttcagcaaaccaaagttgaattaatctctcggcatcaatcaaatgatgttctggaaacaatgaacaaaatgcaaagca |
11731429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 329
Target Start/End: Original strand, 11974974 - 11975068
Alignment:
| Q |
235 |
gaaacccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataacttctga |
329 |
Q |
| |
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|||| ||||| || ||| |||| |||||||||||||| |||||||||||| ||||| ||||||||||||||| || |||| || ||||||||| |
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| T |
11974974 |
gaaatccttctgctgtcaagagatgaattaatctctcgacatcaatcaaatgatcttgaggaaacaatgaacaaaattcaaaacaaaacttctga |
11975068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 12038679 - 12038627
Alignment:
| Q |
174 |
aaaaccagaggaacgaagtcttcgaaacaagcttgaccaaattgttgttctgg |
226 |
Q |
| |
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||||||| |||||| ||||| | |||||||||| ||||||||||||||||||| |
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|
| T |
12038679 |
aaaaccaaaggaacaaagtcgttgaaacaagctcgaccaaattgttgttctgg |
12038627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 110
Target Start/End: Original strand, 11902539 - 11902573
Alignment:
| Q |
76 |
ttgcgagtttatgcatcaaccgattcattctatat |
110 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |
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|
| T |
11902539 |
ttgcgagtttatgcattaaccgattcattctatat |
11902573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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