View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0753_high_12 (Length: 330)
Name: NF0753_high_12
Description: NF0753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0753_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 41531258 - 41531579
Alignment:
| Q |
1 |
catgcctactattgtgttaccattggaatcttctatctataaattgaaagcaaaacattttattcatcacacacacaccaaaatcttaaatcgtctataa |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| ||||| |||||||| |
|
|
| T |
41531258 |
catgcccactattgtgttaccattggaatcttctatctataaattgaaagcaaaacattttattcatcacataaacaccgaaatcataaattgtctataa |
41531357 |
T |
|
| Q |
101 |
ctaatatctttagtgtttttcctctcactctcgttcacatt-gacatcttacttgttgctggtgaccattgtatttgtcgctgaattttgaacattttaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41531358 |
ctaatatctttagtgtttttcctctcactctcgttcacatttgacatcttacatgttgttggtgaccattgtatttgtcgctaaattttgaacattttaa |
41531457 |
T |
|
| Q |
200 |
cgatcacttatatgtccattaaagattaataattgtcgctaaaagtagtttacgttttagtgttacaatggccaccgcaatatgtaagataacaatgtgg |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41531458 |
cgatcacttatatgtccattaaagattaataattatcgctaaaagtagtttacgttttagtgttacaatggccaccgcaatatgtaagataacaatgtgg |
41531557 |
T |
|
| Q |
300 |
atgaccaccacatcatattatt |
321 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
41531558 |
atgaccaccacatcattttatt |
41531579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 41232213 - 41232283
Alignment:
| Q |
128 |
ctctcgttcacattgacatcttacttgttgctggtgaccattgtatttgtcgctgaattttgaacatttta |
198 |
Q |
| |
|
||||||| |||||||||||| | | ||||||||||| |||||||||||||| ||| ||||||||||||||| |
|
|
| T |
41232213 |
ctctcgtacacattgacatcctgcatgttgctggtggccattgtatttgtctctggattttgaacatttta |
41232283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4637 times since January 2019
Visitors: 4838