View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0753_high_13 (Length: 320)
Name: NF0753_high_13
Description: NF0753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0753_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 6 - 271
Target Start/End: Complemental strand, 7498010 - 7497751
Alignment:
| Q |
6 |
gtcgaagaatattatcatgaggcgaaattgagcaagatatatgtagatactaaggagagaatacatgtcaagaagactattaagaattgggtgtttcagt |
105 |
Q |
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| T |
7498010 |
gtcgaagaaaattatcatgaggcgaaattgagcaagatata----gatactaaggagagaatacatgtcaagaagactattgagaattgggtgtttcagt |
7497915 |
T |
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| Q |
106 |
gtaagccataagcaaagtgtcgagggtctccttgtagacattaat-aaaatattggaaaatagtaatgatgcaaacaaattttttgaatccccattgaac |
204 |
Q |
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| T |
7497914 |
gtaagccataagcaaagtgtcgagggtctccttatagacattaataaaaatattggaaaatagtaatgatgcaaacaaattttttgaatccccattgaac |
7497815 |
T |
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| Q |
205 |
acaataattcaccaattattgcaaaataatattgatttttattgttcctttttctagaacccataca |
271 |
Q |
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| T |
7497814 |
acaataattcaccaattattg---aataatattgatttttattgttcctttttctagaacccataca |
7497751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 71 - 276
Target Start/End: Original strand, 37685784 - 37685989
Alignment:
| Q |
71 |
tgtcaagaagactattaagaattgggtgtttcagtgtaagccataagcaaagtgtcgagggtctccttgtagacattaataaaatattggaaaatagtaa |
170 |
Q |
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| T |
37685784 |
tgtcaagaaaactattaagaattgggtgtttcagtgtaagccataagcaaagtgtcgagggtctccttgtagacattaataaaatattggaaaatagtaa |
37685883 |
T |
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| Q |
171 |
tgatgcaaacaaattttttgaatccccattgaacacaataattcaccaattattgcaaaataatattgatttttattgttcctttttctagaacccatac |
270 |
Q |
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| T |
37685884 |
tgatgcaaacaaattttttgaatccccattgaacacaataattcaccaattattggaaaataatattgatttttattgttcctttttctagaacccatat |
37685983 |
T |
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| Q |
271 |
acaacc |
276 |
Q |
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|||||| |
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| T |
37685984 |
acaacc |
37685989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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