View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0753_high_7 (Length: 447)
Name: NF0753_high_7
Description: NF0753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0753_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 78 - 408
Target Start/End: Original strand, 18600829 - 18601174
Alignment:
| Q |
78 |
agatccaagcaaaggatataagaacagcttgaaagaattgactccaattgagttcacctatgcacttttctattgtgaagccaagagaatgaaggtgttt |
177 |
Q |
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| T |
18600829 |
agatccaagcaaaggatataagaagagcttgaaagaattgactccaattgagttcacctatgcacttttctattgtgaagccaagagaatgaaggtgttt |
18600928 |
T |
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| Q |
178 |
atttggtgatgtttttgtgtcactagtgttattgggttggctcagaagaggagttggatcacccatatcaagagtctatgtagtttttctatagaattct |
277 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
18600929 |
atttggtgatgtttttgtgtcactggtgttattgggttggctcagaagaggagttggatcacccatatcaagagtc--tgtagtttttctatagaattct |
18601026 |
T |
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| Q |
278 |
tgtcgtaatgactacctattctatac--------------tatatatggggaatatgcatgcatagctaactatagtatcatctagatattctta----g |
359 |
Q |
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||| |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||| | |
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| T |
18601027 |
tgttgtaatgactacctattctatactatatatatatatatatatatggggaatatgcatgcataact-actatagtatcatctagatattcttagtacg |
18601125 |
T |
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| Q |
360 |
tagtaattgaattttataattatttttcataaaataacaccctcatgtc |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18601126 |
tagtaattgaattttataattatttttcataaaataacaccctcatgtc |
18601174 |
T |
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