View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0753_low_1 (Length: 673)
Name: NF0753_low_1
Description: NF0753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0753_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 11 - 644
Target Start/End: Complemental strand, 8821080 - 8820450
Alignment:
| Q |
11 |
cagagaaaggcaatagcagcaaatcctcagatagtcggctatgaaagcttctcaaatacttcttcacatttgttgaaagattgtagatagtctagtgtca |
110 |
Q |
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| T |
8821080 |
cagagaaaggtgatagcagcaaatcctcagatagtcggctatgaaagtttctcaaatacttc---acatttgttgaaagattgtagatagtccagtgtca |
8820984 |
T |
|
| Q |
111 |
caatcatgcatggcttcagttataattacagtcgtcattgtcaagcttcgttaggtgtatgtttgtattatttgtaagatcagttattcgtttacagctc |
210 |
Q |
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| T |
8820983 |
caatcatgcatggcttcagttataattacagtcgtcattgtcaagcttcgttaggtgtatgtttgtattatttgtaagatcagttattcgtttacagctc |
8820884 |
T |
|
| Q |
211 |
ctacattggtcagacatgatttgtagttgagatcaaatctcttgtttaaaattcttcttgtaataagcaaattacaattacaaaatatgattcggctttt |
310 |
Q |
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| T |
8820883 |
ctacattggtcagacatgatttgtagttgagatcaaatctcttgtt-aaaattcttcttgtaataagcaaattacaattacaaaatatgattcggctttt |
8820785 |
T |
|
| Q |
311 |
ttcccgattcaaaacttcgatattgactta--cagaagcctaaatgaagtaattttggaggaattggaaagagcaaagaaattggattatttttcttgtt |
408 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8820784 |
ttcccgattcaaaacttcgatatcgacttatacagaagcctaaatgaagtaattctgaaggaattagaaagagcaaagaaattggattatttttcttgtt |
8820685 |
T |
|
| Q |
409 |
tcaataggtactggtagaatcaaactcaatataaccatcgactctcattttacttatattgttgacctttcaagcaacgtgtgtttgtgtgccttcatgc |
508 |
Q |
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| T |
8820684 |
tcaataggtactggtagaatcaaactcaatataaccatcgattctcattttacttatattgttgacctttcaagcaacgtgtgtttgtgtgacttcatgc |
8820585 |
T |
|
| Q |
509 |
ttcaattgctcgaattttggttttgcatcatggatgccgaactaatttatttactaatgctttgtttggattggacaagaaagtagaaggaatgtatgtg |
608 |
Q |
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| T |
8820584 |
ttcaattgctcaaattttggttttgcatcgtggatgccg-attaatttatttactaatgctttgtttggattggacaagaaagtagaaggaatgaatgtg |
8820486 |
T |
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| Q |
609 |
aaagaaatgaataaaagtagaatttgatatgataaa |
644 |
Q |
| |
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||| ||||||||||||||||||||||||| |||||| |
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| T |
8820485 |
aaacaaatgaataaaagtagaatttgatacgataaa |
8820450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 2e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 28 - 273
Target Start/End: Original strand, 27762721 - 27762971
Alignment:
| Q |
28 |
agcaaatcctcagatagtcggctatgaaagcttctcaaatacttcttcacatttgttgaaagattgtagatagtctagtgtcacaat----catgcatgg |
123 |
Q |
| |
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|||||||| |||||||||| ||||||| ||| ||| || |||||||||||||||||||||||||||||||| | | ||||| | || ||||| |
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| T |
27762721 |
agcaaatcttcagatagtcagctatga--gctactccaacgcttcttcacatttgttgaaagattgtagataggccattgtcagtttgtcacaaacatgg |
27762818 |
T |
|
| Q |
124 |
cttcagtt---ataattacagtcgtcattgtcaagcttcgttaggtgtatgtttgtattatttgtaagatcagttattcgtttacagctcctacattggt |
220 |
Q |
| |
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||| |||| ||||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||| | |||||| ||| |
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| T |
27762819 |
ctttagttgttataattagtgtcgttgttgtcaaccttcgttagatgtatgtttgtattatttgtaagatcagttattcgttaacagttactacatcggt |
27762918 |
T |
|
| Q |
221 |
cagacatgatttgtagttgagatcaaatctcttgtttaaaattcttcttgtaa |
273 |
Q |
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||||||||||||||||||||| |||| |||||| ||||||||||||||||||| |
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| T |
27762919 |
cagacatgatttgtagttgaggtcaactctcttttttaaaattcttcttgtaa |
27762971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 27012475 - 27012552
Alignment:
| Q |
23 |
atagcagcaaatcctcagatagtcggctatgaaagcttctcaaatacttcttcacatttgttgaaagattgtagatagtc |
102 |
Q |
| |
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|||||| |||||| |||||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
27012475 |
atagcaacaaatcttcagatagtcagctatga--gcttctccaatgcttcttcacatttgttgaaagattgtagatagtc |
27012552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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