View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0753_low_12 (Length: 368)
Name: NF0753_low_12
Description: NF0753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0753_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 8 - 339
Target Start/End: Complemental strand, 41204748 - 41204418
Alignment:
| Q |
8 |
tagcatagggcaacctttaagtactgcgtatatgattaactttagttgagcaaacttttaccttgaaagcataagcagtgtgatacttgttgatcacatc |
107 |
Q |
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| T |
41204748 |
tagcatagggcaac-tttaagtactgcgtatatgattaactttagttgagcaaacttttaccttgaaagcataagcagtgtgatacttgttgatcacatc |
41204650 |
T |
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| Q |
108 |
aattacactattttgctagcattctatgaatctaaaaaacttcagtaattacagcatcatatcaagtgatttgaaaatttggtattacttggataaatca |
207 |
Q |
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| T |
41204649 |
aattacactattttgctagcattctatgaatctgaaaaacttcagtaatgacagcatcatatcgagtgatttgaaaatttggtattacttggataaatca |
41204550 |
T |
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| Q |
208 |
tcttctgaatattacttggatgcaggaatttaaccgagcttgacatacaagagaatgacatcgatgacaaaagtggtgattggttgagttgcttcccaga |
307 |
Q |
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| T |
41204549 |
tcttctgaatattacttggatgcaggaatttaaccgagcttgacatacaagagaatgacatcgatgacaaaagtggtgattggttgagttgcttcccaga |
41204450 |
T |
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| Q |
308 |
aagctttacatcattggaagtattgaactttg |
339 |
Q |
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| T |
41204449 |
aagctttacatcattggaagtattgaactttg |
41204418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 200 - 339
Target Start/End: Original strand, 36145803 - 36145942
Alignment:
| Q |
200 |
ataaatcatcttctgaatattacttggatgcaggaatttaaccgagcttgacatacaagagaatgacatcgatgacaaaagtggtgattggttgagttgc |
299 |
Q |
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| T |
36145803 |
ataaatcatcttctgaatattacctggatgcaggaacttaactgaacttgacatacaggagaatggcgtcgatgataaaagtggtaattggttgagttgc |
36145902 |
T |
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| Q |
300 |
ttcccagaaagctttacatcattggaagtattgaactttg |
339 |
Q |
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| T |
36145903 |
ttcccagaaagctttacatcattggaaatattgaactttg |
36145942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 133
Target Start/End: Original strand, 36145628 - 36145687
Alignment:
| Q |
74 |
aagcataagcagtgtgatacttgttgatcacatcaattacactattttgctagcattcta |
133 |
Q |
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| T |
36145628 |
aagcataagcatcgtaaaaattgttgatcacatcaattccactattttgctagcattcta |
36145687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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