View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0753_low_22 (Length: 292)
Name: NF0753_low_22
Description: NF0753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0753_low_22 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 10 - 265
Target Start/End: Original strand, 232597 - 232852
Alignment:
| Q |
10 |
atgaaagaagagaaggaaaaaacagatagtttcaatgcgattaagcaggagagatataatttgttcatgggtgctttcaaccgtatatctggtaacatag |
109 |
Q |
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| T |
232597 |
atgaaagaagagaaggaaagaacagatagtttcaatgcgattaagcaggagagatataatttgttcatgggtgctttcaaccgtatatctggtaacatag |
232696 |
T |
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| Q |
110 |
ataaaatctacaaacaacttacaaagagcaacacgcatctttttggtggaacagcatacctatatttggaaaatgaagacgatccatttcaacatggcat |
209 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
232697 |
ataaaatctacaaacaacttacaaagagcaacacacatctttttggtggaacagcatacctatatttggaaaatgaagacgatccatttcaacatggcat |
232796 |
T |
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| Q |
210 |
caagtacactgccatgcctcccacaaaggcattcttcgatatggatcaactttctg |
265 |
Q |
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| T |
232797 |
caagtacactgccatgcctcccacaaaggcattcttcgatatggatcaactttctg |
232852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 61 - 237
Target Start/End: Original strand, 30593602 - 30593778
Alignment:
| Q |
61 |
agatataatttgttcatgggtgctttcaaccgtatatctggtaacatagataaaatctacaaacaacttacaaagagcaacacgcatctttttggtggaa |
160 |
Q |
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|||||| |||||||||||| ||||||||||| ||| ||||||| ||||||||||| |||||||||||||||||||||||||| |||| | | ||||||| |
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| T |
30593602 |
agatatgatttgttcatggatgctttcaaccatatcgctggtaatatagataaaatttacaaacaacttacaaagagcaacacacatcctctgggtggaa |
30593701 |
T |
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| Q |
161 |
cagcatacctatatttggaaaatgaagacgatccatttcaacatggcatcaagtacactgccatgcctcccacaaag |
237 |
Q |
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| T |
30593702 |
cagcatacttaaatttggaaaatgaagacgatccatttctgcacggcatgaagtacactgctatgccaccaacaaag |
30593778 |
T |
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