View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0753_low_26 (Length: 287)

Name: NF0753_low_26
Description: NF0753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0753_low_26
NF0753_low_26
[»] scaffold0289 (1 HSPs)
scaffold0289 (160-247)||(16711-16798)
[»] chr6 (14 HSPs)
chr6 (160-247)||(4452698-4452785)
chr6 (160-247)||(28978400-28978487)
chr6 (79-162)||(13775433-13775516)
chr6 (167-278)||(31540006-31540117)
chr6 (79-159)||(3692153-3692233)
chr6 (79-159)||(8895798-8895878)
chr6 (79-159)||(8907033-8907113)
chr6 (79-159)||(21171279-21171359)
chr6 (82-159)||(26663205-26663282)
chr6 (82-159)||(26769176-26769253)
chr6 (82-159)||(26798743-26798820)
chr6 (82-159)||(5867872-5867949)
chr6 (79-159)||(13289587-13289667)
chr6 (79-159)||(13304554-13304634)
[»] chr2 (16 HSPs)
chr2 (160-247)||(27114706-27114793)
chr2 (160-247)||(27125671-27125758)
chr2 (80-158)||(3781322-3781400)
chr2 (80-158)||(3793595-3793673)
chr2 (167-247)||(13063593-13063673)
chr2 (82-158)||(21667779-21667855)
chr2 (82-158)||(21682780-21682856)
chr2 (80-162)||(16031525-16031608)
chr2 (174-247)||(26621850-26621923)
chr2 (79-159)||(40228046-40228126)
chr2 (79-159)||(40243104-40243184)
chr2 (80-159)||(11625786-11625865)
chr2 (80-159)||(11646995-11647074)
chr2 (82-158)||(19558298-19558374)
chr2 (82-156)||(27771883-27771957)
chr2 (82-156)||(27793024-27793098)
[»] scaffold1816 (1 HSPs)
scaffold1816 (161-247)||(1135-1221)
[»] scaffold0182 (1 HSPs)
scaffold0182 (160-247)||(3033-3120)
[»] chr4 (8 HSPs)
chr4 (160-247)||(14750474-14750561)
chr4 (160-244)||(14769577-14769661)
chr4 (79-159)||(6514519-6514599)
chr4 (82-156)||(1501943-1502017)
chr4 (82-145)||(24109470-24109533)
chr4 (82-145)||(24122149-24122212)
chr4 (117-156)||(40096192-40096231)
chr4 (117-156)||(40111203-40111242)
[»] chr3 (19 HSPs)
chr3 (160-247)||(18283360-18283447)
chr3 (160-247)||(18298661-18298748)
chr3 (160-247)||(18313962-18314049)
chr3 (79-158)||(22861354-22861433)
chr3 (79-158)||(22876513-22876592)
chr3 (79-158)||(22891573-22891652)
chr3 (80-159)||(5461513-5461592)
chr3 (80-159)||(5476619-5476698)
chr3 (174-278)||(16065062-16065166)
chr3 (174-278)||(19441879-19441983)
chr3 (79-159)||(21669203-21669283)
chr3 (79-159)||(21684409-21684489)
chr3 (174-278)||(47197449-47197552)
chr3 (82-159)||(7991114-7991192)
chr3 (117-159)||(10637624-10637666)
chr3 (117-159)||(10652602-10652644)
chr3 (174-278)||(7067245-7067348)
chr3 (174-278)||(7082197-7082300)
chr3 (203-247)||(26427038-26427082)
[»] chr8 (10 HSPs)
chr8 (80-159)||(9351279-9351358)
chr8 (80-159)||(9364559-9364638)
chr8 (167-278)||(30368621-30368732)
chr8 (174-278)||(29035352-29035456)
chr8 (174-278)||(14551417-14551521)
chr8 (174-278)||(14572241-14572345)
chr8 (174-278)||(16255967-16256071)
chr8 (174-278)||(18788108-18788212)
chr8 (175-278)||(22141898-22142001)
chr8 (119-159)||(18686726-18686766)
[»] chr7 (17 HSPs)
chr7 (79-158)||(4198036-4198115)
chr7 (79-158)||(4208871-4208950)
chr7 (79-158)||(16741938-16742017)
chr7 (79-158)||(17518119-17518198)
chr7 (79-158)||(17535016-17535095)
chr7 (79-158)||(31554869-31554948)
chr7 (79-158)||(31569858-31569937)
chr7 (80-158)||(3056858-3056936)
chr7 (80-158)||(9614639-9614717)
chr7 (174-278)||(39149371-39149475)
chr7 (79-158)||(39992941-39993020)
chr7 (177-278)||(6224299-6224400)
chr7 (174-276)||(18135987-18136089)
chr7 (82-159)||(22151182-22151259)
chr7 (80-144)||(2112166-2112230)
chr7 (79-159)||(13737099-13737179)
chr7 (215-247)||(4273486-4273518)
[»] chr1 (5 HSPs)
chr1 (79-158)||(51634221-51634300)
chr1 (79-158)||(51647660-51647739)
chr1 (174-278)||(4148826-4148930)
chr1 (79-159)||(36569128-36569208)
chr1 (80-144)||(37885711-37885775)
[»] scaffold0362 (1 HSPs)
scaffold0362 (82-162)||(17328-17408)
[»] scaffold0089 (1 HSPs)
scaffold0089 (174-278)||(23824-23928)
[»] scaffold0008 (1 HSPs)
scaffold0008 (174-278)||(226079-226183)
[»] chr5 (13 HSPs)
chr5 (174-278)||(7814674-7814778)
chr5 (174-278)||(34498496-34498600)
chr5 (82-159)||(9541201-9541278)
chr5 (82-159)||(9554073-9554150)
chr5 (82-156)||(13175738-13175812)
chr5 (82-156)||(13188083-13188157)
chr5 (79-159)||(24693722-24693802)
chr5 (82-158)||(37349112-37349188)
chr5 (82-158)||(37364161-37364237)
chr5 (119-159)||(41669457-41669497)
chr5 (79-159)||(41684264-41684344)
chr5 (117-156)||(8656045-8656084)
chr5 (117-156)||(8671019-8671058)
[»] scaffold0471 (1 HSPs)
scaffold0471 (82-145)||(6732-6795)


Alignment Details
Target: scaffold0289 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 16711 - 16798
Alignment:
Q  160 ctgaagtttttgattggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccg 247  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16711 ctgaagtttttgattggagattctgttgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccg 16798  T

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Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 160 - 247
Target Start/End: Complemental strand, 4452785 - 4452698
Alignment:
Q  160 ctgaagtttttgattggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccg 247  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4452785 ctgacgtttttgattggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccg 4452698  T

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Target: chr6; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 28978400 - 28978487
Alignment:
Q  160 ctgaagtttttgattggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccg 247  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28978400 ctgacgtttttgattggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccg 28978487  T

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Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 13775433 - 13775516
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatatctg 162  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13775433 gagcgttagattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatatctg 13775516  T

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Target: chr6; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 167 - 278
Target Start/End: Complemental strand, 31540117 - 31540006
Alignment:
Q  167 ttttgattggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccgnnnnnnnnccggtgatttc 266  Q
    ||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||    
T  31540117 ttttgcttggagattttgttgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccggaaataaaccggtgatttc 31540018  T
Q  267 acaggttctgct 278  Q
    || |||||||||    
T  31540017 actggttctgct 31540006  T

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Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 3692233 - 3692153
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||| ||||||||||||||||    
T  3692233 gagcgttagattgatctgaaggctgagaacgagggagtaaaaccgaaaataaaccggactggtttaaatctctatatatat 3692153  T

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Target: chr6; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 8895798 - 8895878
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  8895798 gagcgttagattgatctgaaggctgagaacgagggagtaaaaccgaaaataaacaggaccggtttaaatctctatatatat 8895878  T

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Target: chr6; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 8907033 - 8907113
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  8907033 gagcgttagattgatctgaaggctgagaacgagggagtaaaaccgaaaataaacaggaccggtttaaatctctatatatat 8907113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 21171359 - 21171279
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    ||||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  21171359 gagcgttagattgatctgatggctgagaacgagggagtaaaaccgaaaataaaccggaccggtttaaatctctatatatat 21171279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 26663205 - 26663282
Alignment:
Q  82 cgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    ||||||||||||||  |||||||||| || ||   |||||||||||||||||||||||||||||| ||||||||||||    
T  26663205 cgttggattgatctagaggctgagaaagaaaggaaaaaaccgaaaataaaccggaccggttcaaagctctatatatat 26663282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 26769176 - 26769253
Alignment:
Q  82 cgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    ||||||||||||||  |||||||||| || ||   |||||||||||||||||||||||||||||| ||||||||||||    
T  26769176 cgttggattgatctagaggctgagaaagaaaggaaaaaaccgaaaataaaccggaccggttcaaagctctatatatat 26769253  T

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Target: chr6; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 26798743 - 26798820
Alignment:
Q  82 cgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    ||||||||||||||  |||||||||| || ||   |||||||||||||||||||||||||||||| ||||||||||||    
T  26798743 cgttggattgatctagaggctgagaaagaaaggaaaaaaccgaaaataaaccggaccggttcaaagctctatatatat 26798820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 5867949 - 5867872
Alignment:
Q  82 cgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    ||||||||||||||  |||||||||| || |    ||||||||||||||||| |||||||||||| ||||||||||||    
T  5867949 cgttggattgatctagaggctgagaaagaaaagaaaaaaccgaaaataaaccagaccggttcaaagctctatatatat 5867872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 13289587 - 13289667
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    |||||||||||  ||||  |||||||||| || || | | |||||||||||||||||||||||||||   |||||||||||    
T  13289587 gagcgttggatcaatctagaggctgagaaagaaagggaagaaccgaaaataaaccggaccggttcaatgttctatatatat 13289667  T

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Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 13304554 - 13304634
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    |||||||||||  ||||  |||||||||| || || | | |||||||||||||||||||||||||||   |||||||||||    
T  13304554 gagcgttggatcaatctagaggctgagaaagaaagggaagaaccgaaaataaaccggaccggttcaatgttctatatatat 13304634  T

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Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 160 - 247
Target Start/End: Complemental strand, 27114793 - 27114706
Alignment:
Q  160 ctgaagtttttgattggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccg 247  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27114793 ctgaagtttttgattggagattctgttgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccg 27114706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 160 - 247
Target Start/End: Complemental strand, 27125758 - 27125671
Alignment:
Q  160 ctgaagtttttgattggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccg 247  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27125758 ctgaagtttttgattggagattctgttgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccg 27125671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 3781400 - 3781322
Alignment:
Q  80 agcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatata 158  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3781400 agcgttagattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaagtctctatatata 3781322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 3793673 - 3793595
Alignment:
Q  80 agcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatata 158  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3793673 agcgttagattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaagtctctatatata 3793595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 167 - 247
Target Start/End: Complemental strand, 13063673 - 13063593
Alignment:
Q  167 ttttgattggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccg 247  Q
    ||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13063673 ttttgcttggagattttgttgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccg 13063593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 21667779 - 21667855
Alignment:
Q  82 cgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatata 158  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21667779 cgttagattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaagtctctatatata 21667855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 21682780 - 21682856
Alignment:
Q  82 cgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatata 158  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21682780 cgttagattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaagtctctatatata 21682856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 80 - 162
Target Start/End: Original strand, 16031525 - 16031608
Alignment:
Q  80 agcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaat-aaaccggaccggttcaaatctctatatatatctg 162  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  16031525 agcgttagattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaaccggaccggtttaaatctctatatatatctg 16031608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 26621850 - 26621923
Alignment:
Q  174 tggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccg 247  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26621850 tggagattttgttgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccg 26621923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 40228126 - 40228046
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  40228126 gagcgttagattgatctgaaggctgagaacgagggagtaaaaccgaaaataaaccggaccggtttaaatctctatatatat 40228046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 40243184 - 40243104
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  40243184 gagcgttagattgatctgaaggctgagaacgagggagtaaaaccgaaaataaaccggaccggtttaaatctctatatatat 40243104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 80 - 159
Target Start/End: Original strand, 11625786 - 11625865
Alignment:
Q  80 agcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    |||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  11625786 agcgttagattgatctgaaggctgagaacgagggagtaaaaccgaaaataaaccggaccggtttaaatctctatatatat 11625865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 80 - 159
Target Start/End: Original strand, 11646995 - 11647074
Alignment:
Q  80 agcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    |||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  11646995 agcgttagattgatctgaaggctgagaacgagggagtaaaaccgaaaataaaccggaccggtttaaatctctatatatat 11647074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 19558374 - 19558298
Alignment:
Q  82 cgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatata 158  Q
    |||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  19558374 cgttagattgatctagaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaagtctctatatata 19558298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 27771957 - 27771883
Alignment:
Q  82 cgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatata 156  Q
    ||||||||||||||  |||||||||| || ||   |||||||||| ||||||||||||||||||| |||||||||    
T  27771957 cgttggattgatctagaggctgagaaagaaaggaaaaaaccgaaactaaaccggaccggttcaaagctctatata 27771883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 27793098 - 27793024
Alignment:
Q  82 cgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatata 156  Q
    ||||||||||||||  |||||||||| || ||   |||| ||||||||||||||||||||||||| |||||||||    
T  27793098 cgttggattgatctagaggctgagaaagaaaggaaaaaatcgaaaataaaccggaccggttcaaagctctatata 27793024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1816 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold1816
Description:

Target: scaffold1816; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 1135 - 1221
Alignment:
Q  161 tgaagtttttgattggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccg 247  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1135 tgaagtttttgattggagattctgttgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccg 1221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 160 - 247
Target Start/End: Complemental strand, 3120 - 3033
Alignment:
Q  160 ctgaagtttttgattggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccg 247  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3120 ctgaagtttttgattggagattctgttgaatttcttcggaaacactcgattcttcgttttctgtgttgttgatttggttgctggaccg 3033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 14750474 - 14750561
Alignment:
Q  160 ctgaagtttttgattggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccg 247  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14750474 ctgaagtttttgattggaggttctgttgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccg 14750561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 14769577 - 14769661
Alignment:
Q  160 ctgaagtttttgattggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctgga 244  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14769577 ctgaagtttttgattggaggttctgttgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctgga 14769661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 6514519 - 6514599
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  6514519 gagcgttagattgatctgaaggctgagaacgagggagtaaaaccgaaaataaaccggaccggtttaaatctctatatatat 6514599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 1501943 - 1502017
Alignment:
Q  82 cgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatata 156  Q
    ||||||||||||||  |||||||||| || ||   |||||||||||||||||||||||||||||| |||||||||    
T  1501943 cgttggattgatctagaggctgagaaagaaaggaaaaaaccgaaaataaaccggaccggttcaaagctctatata 1502017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 24109533 - 24109470
Alignment:
Q  82 cgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaa 145  Q
    ||||||||||||||  ||| |||||| || || | | |||||||||||||||||||||||||||    
T  24109533 cgttggattgatctagaggttgagaaagaaagggaagaaccgaaaataaaccggaccggttcaa 24109470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 24122212 - 24122149
Alignment:
Q  82 cgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaa 145  Q
    ||||||||||||||  ||| |||||| || || | | |||||||||||||||||||||||||||    
T  24122212 cgttggattgatctagaggttgagaaagaaagggaagaaccgaaaataaaccggaccggttcaa 24122149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 156
Target Start/End: Original strand, 40096192 - 40096231
Alignment:
Q  117 aaaaccgaaaataaaccggaccggttcaaatctctatata 156  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  40096192 aaaaccggaaataaaccggaccggttcaaagctctatata 40096231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 156
Target Start/End: Original strand, 40111203 - 40111242
Alignment:
Q  117 aaaaccgaaaataaaccggaccggttcaaatctctatata 156  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  40111203 aaaaccggaaataaaccggaccggttcaaagctctatata 40111242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 18283360 - 18283447
Alignment:
Q  160 ctgaagtttttgattggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccg 247  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18283360 ctgaagtttttgattggaggttctgttgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccg 18283447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 18298661 - 18298748
Alignment:
Q  160 ctgaagtttttgattggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccg 247  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18298661 ctgaagtttttgattggaggttctgttgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccg 18298748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 18313962 - 18314049
Alignment:
Q  160 ctgaagtttttgattggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccg 247  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18313962 ctgaagtttttgattggaggttctgttgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccg 18314049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 22861354 - 22861433
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatata 158  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22861354 gagcgttagattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatata 22861433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 22876513 - 22876592
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatata 158  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22876513 gagcgttagattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatata 22876592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 22891573 - 22891652
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatata 158  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22891573 gagcgttagattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatata 22891652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 5461592 - 5461513
Alignment:
Q  80 agcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  5461592 agcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccgatttaaatctctatatatat 5461513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 5476698 - 5476619
Alignment:
Q  80 agcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5476698 agcgttagattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggtttaaatctctatatatat 5476619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 174 - 278
Target Start/End: Original strand, 16065062 - 16065166
Alignment:
Q  174 tggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccgnnnnnnnnccggtgatttcacaggtt 273  Q
    |||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||| ||||    
T  16065062 tggagattttgttgaatttcttcggatacacttgattcttcgttttctgtgttgttgatttggttgctggaccggaaataaaccggtgatttcactggtt 16065161  T
Q  274 ctgct 278  Q
    |||||    
T  16065162 ctgct 16065166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 174 - 278
Target Start/End: Complemental strand, 19441983 - 19441879
Alignment:
Q  174 tggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccgnnnnnnnnccggtgatttcacaggtt 273  Q
    |||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||| ||||    
T  19441983 tggagattttgttggatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccggaaataaaccggtgatttcactggtt 19441884  T
Q  274 ctgct 278  Q
    |||||    
T  19441883 ctgct 19441879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 21669283 - 21669203
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    ||||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  21669283 gagcgttagattgatctgatggctgagaacgagggagtaaaaccgaaaataaaccggaccggtttaaatctctatatatat 21669203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 21684489 - 21684409
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    ||||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  21684489 gagcgttagattgatctgatggctgagaacgagggagtaaaaccgaaaataaaccggaccggtttaaatctctatatatat 21684409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 278
Target Start/End: Original strand, 47197449 - 47197552
Alignment:
Q  174 tggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccgnnnnnnnnccggtgatttcacaggtt 273  Q
    ||||||||||| ||| ||||||||||||||||||  | || | ||||||||||||||||| |||||||||||||        ||||||||||||| ||||    
T  47197449 tggagattctgttgagtttcttcggaaacacttggat-ttggctttctgtgttgttgattcggttgctggaccggaaataaaccggtgatttcactggtt 47197547  T
Q  274 ctgct 278  Q
    |||||    
T  47197548 ctgct 47197552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 7991192 - 7991114
Alignment:
Q  82 cgttggattgatctgaaggctgagaatg-agagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    ||||||||||||||  |||||||||| | | ||   |||||||||||||||||||||||||||||| ||||||||||||    
T  7991192 cgttggattgatctagaggctgagaaagaaaaggaaaaaaccgaaaataaaccggaccggttcaaagctctatatatat 7991114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 10637666 - 10637624
Alignment:
Q  117 aaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  10637666 aaaaccgaaaataaaccggaccggttcaaagctctatatatat 10637624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 10652644 - 10652602
Alignment:
Q  117 aaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  10652644 aaaaccgaaaataaaccggaccggttcaaagctctatatatat 10652602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 278
Target Start/End: Complemental strand, 7067348 - 7067245
Alignment:
Q  174 tggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccgnnnnnnnnccggtgatttcacaggtt 273  Q
    ||||||||||| ||| ||||||||||||||||||  | || | |||||||||||||||||  ||||||||||||        ||||||||||||| ||||    
T  7067348 tggagattctgttgagtttcttcggaaacacttggat-ttggctttctgtgttgttgattcagttgctggaccggaaataaaccggtgatttcactggtt 7067250  T
Q  274 ctgct 278  Q
    |||||    
T  7067249 ctgct 7067245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 278
Target Start/End: Complemental strand, 7082300 - 7082197
Alignment:
Q  174 tggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccgnnnnnnnnccggtgatttcacaggtt 273  Q
    ||||||||||| ||| ||||||||||||||||||  | || | |||||||||||||||||  ||||||||||||        ||||||||||||| ||||    
T  7082300 tggagattctgttgagtttcttcggaaacacttggat-ttggctttctgtgttgttgattcagttgctggaccggaaataaaccggtgatttcactggtt 7082202  T
Q  274 ctgct 278  Q
    |||||    
T  7082201 ctgct 7082197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 26427082 - 26427038
Alignment:
Q  203 acttgattcttcgttttctgtgttgttgatttggttgctggaccg 247  Q
    ||||||||||  |||||||||||||||||||||| ||||||||||    
T  26427082 acttgattctgtgttttctgtgttgttgatttggctgctggaccg 26427038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 9351358 - 9351279
Alignment:
Q  80 agcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9351358 agcgttagattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggtttaaatctctatatatat 9351279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 9364638 - 9364559
Alignment:
Q  80 agcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9364638 agcgttagattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggtttaaatctctatatatat 9364559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 167 - 278
Target Start/End: Original strand, 30368621 - 30368732
Alignment:
Q  167 ttttgattggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccgnnnnnnnnccggtgatttc 266  Q
    ||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||    
T  30368621 ttttgcttggagattttgttgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccggaaataaaccggtgatttc 30368720  T
Q  267 acaggttctgct 278  Q
    || |||||||||    
T  30368721 accggttctgct 30368732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 174 - 278
Target Start/End: Complemental strand, 29035456 - 29035352
Alignment:
Q  174 tggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccgnnnnnnnnccggtgatttcacaggtt 273  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||| ||||    
T  29035456 tggagattttgttgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccggaaataaaccggtgatttcactggtt 29035357  T
Q  274 ctgct 278  Q
    |||||    
T  29035356 ctgct 29035352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 174 - 278
Target Start/End: Complemental strand, 14551521 - 14551417
Alignment:
Q  174 tggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccgnnnnnnnnccggtgatttcacaggtt 273  Q
    |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||| ||||    
T  14551521 tggagattttgttgaatttcttcggaaacgcttgattcttcgttttctgtgttgttgatttggttgctggaccggaaataaaccggtgatttcactggtt 14551422  T
Q  274 ctgct 278  Q
    |||||    
T  14551421 ctgct 14551417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 174 - 278
Target Start/End: Complemental strand, 14572345 - 14572241
Alignment:
Q  174 tggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccgnnnnnnnnccggtgatttcacaggtt 273  Q
    |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||| ||||    
T  14572345 tggagattttgttgaatttcttcggaaacgcttgattcttcgttttctgtgttgttgatttggttgctggaccggaaataaaccggtgatttcactggtt 14572246  T
Q  274 ctgct 278  Q
    |||||    
T  14572245 ctgct 14572241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 174 - 278
Target Start/End: Original strand, 16255967 - 16256071
Alignment:
Q  174 tggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccgnnnnnnnnccggtgatttcacaggtt 273  Q
    |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||| ||||    
T  16255967 tggagattttgttgaatttcttcggaaacgcttgattcttcgttttctgtgttgttgatttggttgctggaccggaaataaaccggtgatttcactggtt 16256066  T
Q  274 ctgct 278  Q
    |||||    
T  16256067 ctgct 16256071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 174 - 278
Target Start/End: Original strand, 18788108 - 18788212
Alignment:
Q  174 tggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccgnnnnnnnnccggtgatttcacaggtt 273  Q
    |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||| ||||    
T  18788108 tggagattttgttgaatttcttcggaaacgcttgattcttcgttttctgtgttgttgatttggttgctggaccggaaataaaccggtgatttcactggtt 18788207  T
Q  274 ctgct 278  Q
    |||||    
T  18788208 ctgct 18788212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 175 - 278
Target Start/End: Complemental strand, 22142001 - 22141898
Alignment:
Q  175 ggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccgnnnnnnnnccggtgatttcacaggttc 274  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||        ||||||||||||| |||||    
T  22142001 ggagattttgttgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttagttgctggaccggaaataaaccggtgatttcactggttc 22141902  T
Q  275 tgct 278  Q
    ||||    
T  22141901 tgct 22141898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 18686726 - 18686766
Alignment:
Q  119 aaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    ||||||||||||||||||||||||||| | |||||||||||    
T  18686726 aaccgaaaataaaccggaccggttcaactttctatatatat 18686766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 4198115 - 4198036
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatata 158  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4198115 gagcgttagattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaagtctctatatata 4198036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 4208950 - 4208871
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatata 158  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4208950 gagcgttagattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaagtctctatatata 4208871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 16741938 - 16742017
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatata 158  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  16741938 gagcgttagattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaagtctctatatata 16742017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 17518198 - 17518119
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatata 158  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17518198 gagcgttagattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaagtctctatatata 17518119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 17535016 - 17535095
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatata 158  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17535016 gagcgttagattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaagtctctatatata 17535095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 31554869 - 31554948
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatata 158  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31554869 gagcgttagattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaagtctctatatata 31554948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 31569858 - 31569937
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatata 158  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31569858 gagcgttagattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaagtctctatatata 31569937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 3056858 - 3056936
Alignment:
Q  80 agcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatata 158  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3056858 agcgttagattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaagtctctatatata 3056936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 9614717 - 9614639
Alignment:
Q  80 agcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatata 158  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9614717 agcgttagattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaagtctctatatata 9614639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 174 - 278
Target Start/End: Complemental strand, 39149475 - 39149371
Alignment:
Q  174 tggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccgnnnnnnnnccggtgatttcacaggtt 273  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||| ||||    
T  39149475 tggagattttgttgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccggaaataaaccggtgatttcactggtt 39149376  T
Q  274 ctgct 278  Q
    |||||    
T  39149375 ctgct 39149371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 39992941 - 39993020
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatata 158  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  39992941 gagcgttagattgatctgaaggctgagaacgagggagtaaaaccgaaaataaaccggaccggttcaagtctctatatata 39993020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 177 - 278
Target Start/End: Original strand, 6224299 - 6224400
Alignment:
Q  177 agattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccgnnnnnnnnccggtgatttcacaggttctg 276  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||        ||||||||||||| |||||||    
T  6224299 agattttgttgaatttcttcggaaacacttgattcttcgttttctgtgctgttgatttgattgctggaccggaaataaaccggtgatttcactggttctg 6224398  T
Q  277 ct 278  Q
    ||    
T  6224399 ct 6224400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 276
Target Start/End: Complemental strand, 18136089 - 18135987
Alignment:
Q  174 tggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccgnnnnnnnnccggtgatttcacaggtt 273  Q
    |||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||        ||||||||||||| ||||    
T  18136089 tggagattttgttgaatttcttcggaaacacttgattcttcgctttctgtgttgttgatttcgttactggaccggaaataaaccggtgatttcactggtt 18135990  T
Q  274 ctg 276  Q
    |||    
T  18135989 ctg 18135987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 22151259 - 22151182
Alignment:
Q  82 cgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    ||||||||||||||  |||||||||| || |  | ||||||||||||||||| |||||||||||| ||||||||||||    
T  22151259 cgttggattgatctagaggctgagaaagaaaaggaaaaaccgaaaataaaccagaccggttcaaagctctatatatat 22151182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 2112166 - 2112230
Alignment:
Q  80 agcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttca 144  Q
    ||||||||||| ||||||||| |||||| || || | | ||| ||||||||||||||||||||||    
T  2112166 agcgttggattaatctgaaggttgagaaagaaagggaagaactgaaaataaaccggaccggttca 2112230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 13737099 - 13737179
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    |||||||||||  ||||  |||||||||| || || | | |||||||||||||||||||||||||||   |||||||||||    
T  13737099 gagcgttggatcaatctagaggctgagaaagaaagggaagaaccgaaaataaaccggaccggttcaatgttctatatatat 13737179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 247
Target Start/End: Complemental strand, 4273518 - 4273486
Alignment:
Q  215 gttttctgtgttgttgatttggttgctggaccg 247  Q
    ||||| |||||||||||||||||||||||||||    
T  4273518 gttttttgtgttgttgatttggttgctggaccg 4273486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 51634300 - 51634221
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatata 158  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  51634300 gagcgttagattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaagtctctatatata 51634221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 51647739 - 51647660
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatata 158  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  51647739 gagcgttagattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaagtctctatatata 51647660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 174 - 278
Target Start/End: Original strand, 4148826 - 4148930
Alignment:
Q  174 tggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccgnnnnnnnnccggtgatttcacaggtt 273  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||        ||||||||||||| ||||    
T  4148826 tggagattttgttgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaacggaaataaaccggtgatttcactggtt 4148925  T
Q  274 ctgct 278  Q
    |||||    
T  4148926 ctgct 4148930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 36569208 - 36569128
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  36569208 gagcgttagattgatctgaaggctgagaacgagggagtaaaaccgaaaataaaccggaccggtttaaatctctatatatat 36569128  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 37885711 - 37885775
Alignment:
Q  80 agcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttca 144  Q
    ||||||||||| ||||||||| |||||| || || | | ||||||||||||||||||||||||||    
T  37885711 agcgttggattaatctgaaggttgagaaagaaagggaagaaccgaaaataaaccggaccggttca 37885775  T

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Target: scaffold0362 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 17328 - 17408
Alignment:
Q  82 cgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatatctg 162  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  17328 cgttagattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccagaccggttcaaacctctatatatatctg 17408  T

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Target: scaffold0089 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 174 - 278
Target Start/End: Complemental strand, 23928 - 23824
Alignment:
Q  174 tggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccgnnnnnnnnccggtgatttcacaggtt 273  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||| ||||    
T  23928 tggagattttgttgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccggaaataaaccggtgatttcactggtt 23829  T
Q  274 ctgct 278  Q
    |||||    
T  23828 ctgct 23824  T

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Target: scaffold0008 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 174 - 278
Target Start/End: Original strand, 226079 - 226183
Alignment:
Q  174 tggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccgnnnnnnnnccggtgatttcacaggtt 273  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||| ||||    
T  226079 tggagattttgttgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccggaaataaaccggtgatttcactggtt 226178  T
Q  274 ctgct 278  Q
    |||||    
T  226179 ctgct 226183  T

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Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 174 - 278
Target Start/End: Complemental strand, 7814778 - 7814674
Alignment:
Q  174 tggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccgnnnnnnnnccggtgatttcacaggtt 273  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||| ||||    
T  7814778 tggagattttgttgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccggaaataaaccggtgatttcactggtt 7814679  T
Q  274 ctgct 278  Q
    |||||    
T  7814678 ctgct 7814674  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 174 - 278
Target Start/End: Original strand, 34498496 - 34498600
Alignment:
Q  174 tggagattctggtgaatttcttcggaaacacttgattcttcgttttctgtgttgttgatttggttgctggaccgnnnnnnnnccggtgatttcacaggtt 273  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||        ||||||||||||| ||||    
T  34498496 tggagattttgttgaatttcttcggaaacacttgattcttcgttttctgtgttgttaatttggttgctggaccggaaataaaccggtgatttcactggtt 34498595  T
Q  274 ctgct 278  Q
    |||||    
T  34498596 ctgct 34498600  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 9541201 - 9541278
Alignment:
Q  82 cgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    ||||||||||||||  |||||||||| || || | ||||||||||||||||| |||||||||||| ||||||||||||    
T  9541201 cgttggattgatctagaggctgagaaagaaagggaaaaaccgaaaataaaccagaccggttcaaagctctatatatat 9541278  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 9554073 - 9554150
Alignment:
Q  82 cgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    ||||||||||||||  |||||||||| || || | ||||||||||||||||| |||||||||||| ||||||||||||    
T  9554073 cgttggattgatctagaggctgagaaagaaagggaaaaaccgaaaataaaccagaccggttcaaagctctatatatat 9554150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 13175738 - 13175812
Alignment:
Q  82 cgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatata 156  Q
    ||||||||||||||  |||||||||| || ||   |||||||||||||||||||||||||||||| |||||||||    
T  13175738 cgttggattgatctagaggctgagaaagaaaggaaaaaaccgaaaataaaccggaccggttcaaagctctatata 13175812  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 13188083 - 13188157
Alignment:
Q  82 cgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatata 156  Q
    ||||||||||||||  |||||||||| || |    |||||||||||||||||||||||||||||| |||||||||    
T  13188083 cgttggattgatctagaggctgagaaagaaaagaaaaaaccgaaaataaaccggaccggttcaaagctctatata 13188157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 24693722 - 24693802
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    |||||||||||  ||||  |||||||||| || || | | |||||||||||||||||||||||||||   |||||||||||    
T  24693722 gagcgttggatcaatctagaggctgagaaagaaagggaagaaccgaaaataaaccggaccggttcaatgttctatatatat 24693802  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 37349112 - 37349188
Alignment:
Q  82 cgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatata 158  Q
    |||| |||||||||  |||||||||| || ||   ||||||| ||||||||||||| ||||||| ||||||||||||    
T  37349112 cgttagattgatctagaggctgagaaagaaaggaaaaaaccggaaataaaccggactggttcaagtctctatatata 37349188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 37364161 - 37364237
Alignment:
Q  82 cgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatata 158  Q
    |||| |||||||||  |||||||||| || ||   ||||||| ||||||||||||| ||||||| ||||||||||||    
T  37364161 cgttagattgatctagaggctgagaaagaaaggaaaaaaccggaaataaaccggactggttcaagtctctatatata 37364237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 41669497 - 41669457
Alignment:
Q  119 aaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  41669497 aaccgaaaataaaccggaccggttcaaagttctatatatat 41669457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 41684344 - 41684264
Alignment:
Q  79 gagcgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaaatctctatatatat 159  Q
    |||||||||||  ||||  ||| |||||| || || | | ||||||||||||||||||||||||||||  |||||||||||    
T  41684344 gagcgttggatcaatctagaggttgagaaagaaagggaagaaccgaaaataaaccggaccggttcaaagttctatatatat 41684264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 156
Target Start/End: Original strand, 8656045 - 8656084
Alignment:
Q  117 aaaaccgaaaataaaccggaccggttcaaatctctatata 156  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  8656045 aaaaccggaaataaaccggaccggttcaaagctctatata 8656084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 156
Target Start/End: Original strand, 8671019 - 8671058
Alignment:
Q  117 aaaaccgaaaataaaccggaccggttcaaatctctatata 156  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  8671019 aaaaccggaaataaaccggaccggttcaaagctctatata 8671058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 6795 - 6732
Alignment:
Q  82 cgttggattgatctgaaggctgagaatgagagagtaaaaccgaaaataaaccggaccggttcaa 145  Q
    ||||||||||||||  ||| |||||| || || | | |||||||||||||||||||||||||||    
T  6795 cgttggattgatctagaggttgagaaagaaagggaagaaccgaaaataaaccggaccggttcaa 6732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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