View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0753_low_27 (Length: 285)

Name: NF0753_low_27
Description: NF0753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0753_low_27
NF0753_low_27
[»] chr1 (1 HSPs)
chr1 (1-276)||(36315187-36315465)
[»] chr8 (22 HSPs)
chr8 (51-276)||(19344454-19344679)
chr8 (50-276)||(19389897-19390123)
chr8 (51-217)||(19504652-19504818)
chr8 (51-260)||(19336766-19336975)
chr8 (53-275)||(19489443-19489664)
chr8 (45-232)||(19470107-19470294)
chr8 (45-232)||(19541031-19541218)
chr8 (45-232)||(19591480-19591667)
chr8 (50-235)||(19458413-19458598)
chr8 (50-235)||(19556091-19556276)
chr8 (45-248)||(19410120-19410323)
chr8 (45-248)||(19457139-19457342)
chr8 (45-248)||(19523736-19523939)
chr8 (51-248)||(19354801-19354995)
chr8 (58-248)||(19375930-19376120)
chr8 (51-226)||(19173419-19173597)
chr8 (157-276)||(19373462-19373581)
chr8 (53-248)||(19404064-19404256)
chr8 (53-248)||(19447846-19448041)
chr8 (53-248)||(19533035-19533230)
chr8 (50-94)||(19468341-19468385)
chr8 (45-94)||(19469168-19469217)


Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 36315187 - 36315465
Alignment:
Q  1 acactactgtgccattaacatctattacaatcaagtatcttctcaattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36315187 acactactgtgccattaacatctattacaatcaagtatcttctcaattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgt 36315286  T
Q  101 atcacctggcttcaaactatcgtttgttgcattaacataaagactagtagtggtactccaccacaaccataagtatatcaaaataatttgtttctttatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36315287 atcacctggcttcaaactatcgtttgttgcattaacataaagactagtagtagtactccaccacaaccataagtatatcaaaataatttgtttctttatt 36315386  T
Q  201 ctaaagcttatcatgatcaatg---aatattgtttcaaaacgaagagaaatgtactcaccaaacccgaaggagaataat 276  Q
    ||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  36315387 ctaaagcttatcatgatcaatgaataatattgtttcaaaaagaagagaaatgtactcatcaaacccgaaggagaataat 36315465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 51 - 276
Target Start/End: Complemental strand, 19344679 - 19344454
Alignment:
Q  51 agacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtag 150  Q
    |||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |||   ||||||    
T  19344679 agacaatacttgccttgtttagaacatagcttggatttggaattcaatgtatcacctggcttcaaactatcatttgttgcattaacacaaatgttagtag 19344580  T
Q  151 tggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaatgt 250  Q
      ||| ||||||||||||||||||||||||| | || ||||||||||||  ||||||||||||||||| |||||||||||||||||| |||||||||| |    
T  19344579 aagtaatccaccacaaccataagtatatcaatacaacttgtttctttatcttaaagcttatcatgatcgatgaatattgtttcaaaaagaagagaaatat 19344480  T
Q  251 actcaccaaacccgaaggagaataat 276  Q
    ||| | | ||||||||||||||||||    
T  19344479 acttatcgaacccgaaggagaataat 19344454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 50 - 276
Target Start/End: Complemental strand, 19390123 - 19389897
Alignment:
Q  50 aagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagta 149  Q
    ||||||||||||| |||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||   |||||    
T  19390123 aagacaatacttgtcttgtttagaacgtagcttggaattggaattcaatgtatcacctggcttcaaactatcatttgttgcattaacacaaatgttagta 19390024  T
Q  150 gtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaatg 249  Q
    |  ||| ||||||||||||||||||||||||| | || |||||||||||||  | |||||||||||||  ||||  |||||||||||| ||||||||||     
T  19390023 gaagtaatccaccacaaccataagtatatcaatacaacttgtttctttatttcatagcttatcatgattgatgataattgtttcaaaaagaagagaaata 19389924  T
Q  250 tactcaccaaacccgaaggagaataat 276  Q
    ||||||| ||||||||| |||||||||    
T  19389923 tactcactaaacccgaacgagaataat 19389897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 51 - 217
Target Start/End: Original strand, 19504652 - 19504818
Alignment:
Q  51 agacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtag 150  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||| || ||| ||||||||    
T  19504652 agacaatacttgtcttgtttagaacatagcgtggaattggaattcaatgtatcacctggcttcaaactatctttcgttgcattaccacaaatactagtag 19504751  T
Q  151 tggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgat 217  Q
    | ||||||||||||||||||||||||||||| | || |||||||||||||   || |||||||||||    
T  19504752 tagtactccaccacaaccataagtatatcaatacaacttgtttctttatttcgaaacttatcatgat 19504818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 51 - 260
Target Start/End: Complemental strand, 19336975 - 19336766
Alignment:
Q  51 agacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtag 150  Q
    |||||| |||| ||||||| |||||||||| |||| |||||||| ||||||||||||||||||||||||||  ||||||| |||||| ||| | ||| ||    
T  19336975 agacaaaactttccttgttcagaacatagcttggatttggaatttaatgtatcacctggcttcaaactatcacttgttgctttaacacaaatattagcag 19336876  T
Q  151 tggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaatgt 250  Q
    | ||  ||||||||||||||||||||||| ||| ||||||||| ||| || ||||||||||||||||  |||||||||||||||||| |||||||||| |    
T  19336875 tagtgttccaccacaaccataagtatatccaaacaatttgtttatttcttttaaagcttatcatgattgatgaatattgtttcaaaaagaagagaaatat 19336776  T
Q  251 actcaccaaa 260  Q
    ||| ||||||    
T  19336775 acttaccaaa 19336766  T

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Target: chr8; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 53 - 275
Target Start/End: Complemental strand, 19489664 - 19489443
Alignment:
Q  53 acaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtagtg 152  Q
    |||||||||||||||||| ||||||||| |||| ||| || | | ||||||||||||||||||||||||  |||||||||||||| ||| ||| |||||     
T  19489664 acaatacttgccttgtttggaacatagcttggatttgtaagtcactgtatcacctggcttcaaactatcacttgttgcattaacacaaatactcgtagta 19489565  T
Q  153 gtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaatgtac 252  Q
    ||| || |||||||||| ||| ||||||||| | | |||||||||||| ||||||||||||||||   ||| ||||||||||||| |||||||||| |||    
T  19489564 gtattc-accacaaccaaaagcatatcaaaacagtctgtttctttattttaaagcttatcatgattgctgagtattgtttcaaaatgaagagaaatatac 19489466  T
Q  253 tcaccaaacccgaaggagaataa 275  Q
    ||||||||||| |||||| ||||    
T  19489465 tcaccaaaccccaaggagtataa 19489443  T

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Target: chr8; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 45 - 232
Target Start/End: Original strand, 19470107 - 19470294
Alignment:
Q  45 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagac 144  Q
    |||| ||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |||       
T  19470107 aattgaagacaaaacttgccttgtttagaacatagcttggatttggaattcaatgtatcacctggcttcaaactatcatttgttgcattaacacaaatgt 19470206  T
Q  145 tagtagtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgttt 232  Q
    ||||||  ||| ||||||||||||||||||||||||| | || ||||||||| |||  ||||||||||||| |  |||||||||||||    
T  19470207 tagtagaagtaatccaccacaaccataagtatatcaatacaacttgtttcttgatttcaaagcttatcatgtttgatgaatattgttt 19470294  T

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Target: chr8; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 45 - 232
Target Start/End: Original strand, 19541031 - 19541218
Alignment:
Q  45 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagac 144  Q
    |||| ||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |||       
T  19541031 aattgaagacaaaacttgccttgtttagaacatagcttggatttggaattcaatgtatcacctggcttcaaactatcatttgttgcattaacacaaatgt 19541130  T
Q  145 tagtagtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgttt 232  Q
    ||||||  ||| ||||||||||||||||||||||||| | || ||||||||| |||  ||||||||||||| |  |||||||||||||    
T  19541131 tagtagaagtaatccaccacaaccataagtatatcaatacaacttgtttcttgatttcaaagcttatcatgtttgatgaatattgttt 19541218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 45 - 232
Target Start/End: Complemental strand, 19591667 - 19591480
Alignment:
Q  45 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagac 144  Q
    |||| ||||||| ||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |||       
T  19591667 aattgaagacaaaacttgccttgtttagaacatagcttggatttggaattcaatgtatcacctggcttcaaactatcatttgttgcattaacacaaatgt 19591568  T
Q  145 tagtagtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgttt 232  Q
    ||||||  ||| ||||||||||||||||||||||||| | || ||||||||| |||  ||||||||||||| |  |||||||||||||    
T  19591567 tagtagaagtaatccaccacaaccataagtatatcaatacaacttgtttcttgatttcaaagcttatcatgtttgatgaatattgttt 19591480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 50 - 235
Target Start/End: Original strand, 19458413 - 19458598
Alignment:
Q  50 aagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagta 149  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   | |||| | |||| ||| | ||| |    
T  19458413 aagacaaaacttgccttgtttagaacatagcgtggaattggaattcaatgtatcacctggcttcaaactatcacgttttgcttcaacacaaatattagca 19458512  T
Q  150 gtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaa 235  Q
    || ||| ||||||||||||||||||||||||| | || |||||||||||||   ||||||||||||||  ||||||||||||||||    
T  19458513 gtagtaatccaccacaaccataagtatatcaatacaacttgtttctttatttccaagcttatcatgattgatgaatattgtttcaa 19458598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 50 - 235
Target Start/End: Original strand, 19556091 - 19556276
Alignment:
Q  50 aagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagta 149  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   | |||| | |||| ||| | ||| |    
T  19556091 aagacaaaacttgccttgtttagaacatagcgtggaattggaattcaatgtatcacctggcttcaaactatcacgttttgcttcaacacaaatattagca 19556190  T
Q  150 gtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaa 235  Q
    || ||| ||||||||||||||||||||||||| | || |||||||||||||   ||||||||||||||  ||||||||||||||||    
T  19556191 gtagtaatccaccacaaccataagtatatcaatacaacttgtttctttatttccaagcttatcatgattgatgaatattgtttcaa 19556276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 45 - 248
Target Start/End: Complemental strand, 19410323 - 19410120
Alignment:
Q  45 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagac 144  Q
    |||| ||||||| ||||||||||||||||||||||| |||| ||| |||| ||| ||||||||||||||||||||||  ||||||| | |||| ||| |     
T  19410323 aattgaagacaaaacttgccttgtttagaacatagcttggatttgtaattcaatttatcacctggcttcaaactatcacttgttgcttcaacacaaatat 19410224  T
Q  145 tagtagtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagag 244  Q
    ||| ||| ||  ||||||||||||||| ||||||||| | || |||||||||||||  |||||||||||| ||   ||||||||||||||||| ||||||    
T  19410223 tagcagtagtgttccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatcattgttgaatattgtttcaaaaagaagag 19410124  T
Q  245 aaat 248  Q
    ||||    
T  19410123 aaat 19410120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 45 - 248
Target Start/End: Complemental strand, 19457342 - 19457139
Alignment:
Q  45 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagac 144  Q
    |||| ||||||| ||||||||||||||||||||||| |||| ||| |||| ||| ||||||||||||||||||||||  ||||||| | |||| ||| |     
T  19457342 aattgaagacaaaacttgccttgtttagaacatagcttggatttgtaattcaatttatcacctggcttcaaactatcacttgttgcttcaacacaaatat 19457243  T
Q  145 tagtagtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagag 244  Q
    ||| ||| ||  ||||||||||||||| ||||||||| | || |||||||||||||  |||||||||||| ||   ||||||||||||||||| ||||||    
T  19457242 tagcagtagtgttccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatcattgttgaatattgtttcaaaaagaagag 19457143  T
Q  245 aaat 248  Q
    ||||    
T  19457142 aaat 19457139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 45 - 248
Target Start/End: Original strand, 19523736 - 19523939
Alignment:
Q  45 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagac 144  Q
    |||| ||||||| ||||||||||||||||||||||| |||| ||| |||| ||| ||||||||||||||||||||||  ||||||| | |||| ||| |     
T  19523736 aattgaagacaaaacttgccttgtttagaacatagcttggatttgtaattcaatttatcacctggcttcaaactatcacttgttgcttcaacacaaatat 19523835  T
Q  145 tagtagtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagag 244  Q
    ||| ||| ||  ||||||||||||||| ||||||||| | || |||||||||||||  |||||||||||| ||   ||||||||||||||||| ||||||    
T  19523836 tagcagtagtgttccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatcattgttgaatattgtttcaaaaagaagag 19523935  T
Q  245 aaat 248  Q
    ||||    
T  19523936 aaat 19523939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 51 - 248
Target Start/End: Complemental strand, 19354995 - 19354801
Alignment:
Q  51 agacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtag 150  Q
    ||||||||| |||||||||||||||||||  ||||||| | ||  ||| ||||||||||| |||||||||| |||||||| |||||| |||  |||||||    
T  19354995 agacaatacatgccttgtttagaacataggttggaatttgcatccaatttatcacctggcctcaaactatcatttgttgctttaacacaaatgctagtag 19354896  T
Q  151 tggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaat 248  Q
    || |   |||||||||||||| ||||||||| | || |||||||||||||  |||||||||||||||  ||||||||||||| |||| ||||||||||    
T  19354895 tgtt---ccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatgattgatgaatattgtttaaaaaagaagagaaat 19354801  T

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Target: chr8; HSP #15
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 58 - 248
Target Start/End: Complemental strand, 19376120 - 19375930
Alignment:
Q  58 acttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtagtggtact 157  Q
    ||||||||||||| ||| ||||||||||||| | || |||| ||||||||||||||||||||||  ||||||| | |||| ||| | ||| ||| ||  |    
T  19376120 acttgccttgttttgaatatagcgtggaatttgcatcaaatttatcacctggcttcaaactatcacttgttgcttcaacacaaatattagcagtagtgtt 19376021  T
Q  158 ccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaat 248  Q
    |||||||||||||| ||||||||| | || |||||||||||||  |||||||||||| ||  |||||||||||||||||| ||||||||||    
T  19376020 ccaccacaaccataggtatatcaatacaacttgtttctttatttcaaagcttatcatcattgatgaatattgtttcaaaaagaagagaaat 19375930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 51 - 226
Target Start/End: Original strand, 19173419 - 19173597
Alignment:
Q  51 agacaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagt-- 148  Q
    |||||| ||||||||||||||||||||| | |||| || ||||| ||||||||||||||||||||||||||  ||||||| |||||| ||| | ||||      
T  19173419 agacaaaacttgccttgtttagaacataacttggatttcgaattcaatgtatcacctggcttcaaactatcacttgttgctttaacacaaatattagtag 19173518  T
Q  149 -agtggtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaata 226  Q
     ||| ||| ||||||||||||||||||||||||| | || |||||||||||||  |||||||||||||||  |||||||    
T  19173519 cagttgtattccaccacaaccataagtatatcaatacaacttgtttctttatttcaaagcttatcatgattgatgaata 19173597  T

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Target: chr8; HSP #17
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 157 - 276
Target Start/End: Complemental strand, 19373581 - 19373462
Alignment:
Q  157 tccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaatgtactcac 256  Q
    ||||||||||||||||||||||||| | || ||||||||||||  ||||||||||||||||| |||||||||||||||||| |||||||||| |||| |     
T  19373581 tccaccacaaccataagtatatcaatacaacttgtttctttatcttaaagcttatcatgatcgatgaatattgtttcaaaaagaagagaaatatactgat 19373482  T
Q  257 caaacccgaaggagaataat 276  Q
    | ||||||||||||||||||    
T  19373481 cgaacccgaaggagaataat 19373462  T

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Target: chr8; HSP #18
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 53 - 248
Target Start/End: Complemental strand, 19404256 - 19404064
Alignment:
Q  53 acaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtagtg 152  Q
    ||||||||| |||||||||||||||||  ||||||| | ||  ||| |||||||||||||||||||||| ||| |||| |||||| |||  ||||| |||    
T  19404256 acaatacttaccttgtttagaacataggttggaatttgcatccaatttatcacctggcttcaaactatcatttattgctttaacacaaatgctagtcgtg 19404157  T
Q  153 gtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaat 248  Q
     |   |||||||||||||| ||||||||| | || |||||||||||||  ||| |||||||| ||  |||||||||||||||||| ||||||||||    
T  19404156 tt---ccaccacaaccataggtatatcaatacaacttgtttctttatttcaaaacttatcatcattgatgaatattgtttcaaaaagaagagaaat 19404064  T

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Target: chr8; HSP #19
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 53 - 248
Target Start/End: Complemental strand, 19448041 - 19447846
Alignment:
Q  53 acaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtagtg 152  Q
    |||| ||||||||||||| ||| ||||||||||||| | || |||| ||||||||||||||||||||||  ||||||| | |||| ||| | ||| |       
T  19448041 acaaaacttgccttgttttgaatatagcgtggaatttgcatcaaatttatcacctggcttcaaactatcacttgttgcttcaacacaaatattagcaaca 19447942  T
Q  153 gtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaat 248  Q
    ||  ||||||||||||||| ||||||||| | |  |||||||||||||  |||||||||||||||  ||||||||| |||||||| ||||||||||    
T  19447941 gtgttccaccacaaccataggtatatcaatagatcttgtttctttatttcaaagcttatcatgattcatgaatattttttcaaaaagaagagaaat 19447846  T

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Target: chr8; HSP #20
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 53 - 248
Target Start/End: Original strand, 19533035 - 19533230
Alignment:
Q  53 acaatacttgccttgtttagaacatagcgtggaattggaattaaatgtatcacctggcttcaaactatcgtttgttgcattaacataaagactagtagtg 152  Q
    |||| ||||||||||||| ||| ||||||||||||| | || |||| ||||||||||||||||||||||  ||||||| | |||| ||| | ||| |       
T  19533035 acaaaacttgccttgttttgaatatagcgtggaatttgcatcaaatttatcacctggcttcaaactatcacttgttgcttcaacacaaatattagcaaca 19533134  T
Q  153 gtactccaccacaaccataagtatatcaaaataatttgtttctttattctaaagcttatcatgatcaatgaatattgtttcaaaacgaagagaaat 248  Q
    ||  ||||||||||||||| ||||||||| | |  |||||||||||||  |||||||||||||||  ||||||||| |||||||| ||||||||||    
T  19533135 gtgttccaccacaaccataggtatatcaatagatcttgtttctttatttcaaagcttatcatgattcatgaatattttttcaaaaagaagagaaat 19533230  T

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Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 19468341 - 19468385
Alignment:
Q  50 aagacaatacttgccttgtttagaacatagcgtggaattggaatt 94  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  19468341 aagacaaaacttgccttgtttagaacatagcgtggaattggaatt 19468385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 19469168 - 19469217
Alignment:
Q  45 aattcaagacaatacttgccttgtttagaacatagcgtggaattggaatt 94  Q
    |||| ||||||| ||||||||||||||||||||||| |||| ||||||||    
T  19469168 aattgaagacaaaacttgccttgtttagaacatagcttggatttggaatt 19469217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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