View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0753_low_3 (Length: 617)
Name: NF0753_low_3
Description: NF0753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0753_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 96 - 611
Target Start/End: Original strand, 25003840 - 25004360
Alignment:
| Q |
96 |
gactttcatttggattatttagaaggagcggaatctcatgaattttcttaataaagagttgtcttttgctcagattgttgatagagaaaaacttcattca |
195 |
Q |
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||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25003840 |
gactttcatttagattatttggaaggagcagaatctcatgaattttcttaataaagagttgtcttttgctcagattgttgatagagaaaaacttcattca |
25003939 |
T |
|
| Q |
196 |
tggcggtctaagggggaaatgtctagtttagcgtttgatctccatgcttggttgagtaacgtgtcactttgtattagttattttaacgggtaatgttgct |
295 |
Q |
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||||||||||||| | | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25003940 |
tggcggtctaaggtgtacatgtctagtttagcttttgatctccatgcttggttgagtaacgtgtcactttgtattagttattttaacgggtaatgttgct |
25004039 |
T |
|
| Q |
296 |
tgttggcttttaaatcttcttttcctttaaagttttttcttgtaaactatgaccttgttttgatagcttagaagacacatcttatacttaaatcggtatc |
395 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25004040 |
tgttggcttttaaatcttcttttcctttaaagttatttcttgtaaactatgaccttgttttgatagcttagaagacacatcttatacttaaatcggtatc |
25004139 |
T |
|
| Q |
396 |
atcactttcttcgttattttattccatttggctttttat--aaatnnnnnnnntttgtgaagtg---ttatctcattctattcccttttatactccctta |
490 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
25004140 |
atcactttcttctttattttattccatttggctttttataaaaaaaaataaaaattgtgaagtgttattatctcattctattcccttttatagtccctta |
25004239 |
T |
|
| Q |
491 |
ctcaatgctctctttcctttctctctaatctaaattcctataattgctaaaccaaacatatattttttctttgtttaaaaatcaaacaaacttttacatg |
590 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25004240 |
ctcaatgctctctttcctttctatctaatctaaattcctataattgctaaaccaaacatatattttttctttgtttaaaaatcaaacaaacttttacatg |
25004339 |
T |
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| Q |
591 |
agttgtttatgacagaataat |
611 |
Q |
| |
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||||||||||||||| ||||| |
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| T |
25004340 |
agttgtttatgacagtataat |
25004360 |
T |
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