View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0753_low_4 (Length: 544)

Name: NF0753_low_4
Description: NF0753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0753_low_4
NF0753_low_4
[»] chr5 (9 HSPs)
chr5 (30-496)||(1738929-1739396)
chr5 (30-497)||(1744271-1744739)
chr5 (30-385)||(1724452-1724807)
chr5 (118-471)||(1759999-1760359)
chr5 (33-146)||(1725096-1725215)
chr5 (90-169)||(1763591-1763671)
chr5 (46-112)||(1760555-1760621)
chr5 (34-87)||(1739510-1739563)
chr5 (271-356)||(1763481-1763566)
[»] chr3 (6 HSPs)
chr3 (30-485)||(2022711-2023176)
chr3 (46-477)||(3167167-3167608)
chr3 (271-468)||(3156896-3157094)
chr3 (271-371)||(3139182-3139282)
chr3 (118-170)||(3139020-3139072)
chr3 (118-170)||(3156752-3156804)
[»] chr8 (1 HSPs)
chr8 (271-468)||(23852062-23852260)
[»] chr7 (6 HSPs)
chr7 (122-188)||(7484275-7484341)
chr7 (271-369)||(7491190-7491288)
chr7 (271-369)||(7498911-7499009)
chr7 (402-483)||(7484568-7484649)
chr7 (322-395)||(9012087-9012160)
chr7 (149-185)||(9011902-9011938)


Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 30 - 496
Target Start/End: Complemental strand, 1739396 - 1738929
Alignment:
Q  30 attactactctccatgtttctcaaaccaacaagagaaggatttaatatatctttcaaatgcaaatcaccatttctatactcaaaagggccaaaaccatgt 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1739396 attactactctccatgtttctcaaaccaacaagagaaggatttaatatatctttcaaatgcaaatcaccattactatactcaaaagggccaaaaccatgt 1739297  T
Q  130 ggggcaatcctagggttaatataagatggtttttgaatcatagattccattctaacaccgagtgccccgtaattagggggtgtnnnnnnngtgtttgggt 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  1739296 ggggcaatcctagggttaatataagatggtttttgaatcatagattccattctaacaccgagtgccccgtaattagggggtgtaaaaaaagtgtttgggt 1739197  T
Q  230 agctaaaataagggttaagaagaggttgccctaaacctaattcatacctttgtttaagttgcttttgcaacgcacgttctgccttatgagcgttttggtg 329  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1739196 agcaaaaataagggttaagaagaggttgccctaaacctaattcatacctttgtttaagttgcttttgcaacgcacgttctgccttatgagcgttttggtg 1739097  T
Q  330 tccacctaacgcttgcgaagtagaaaattttcccttgcaaaataagcatgaaaaagtccttgaatccatt-ttttctcctcattcttcttctcatctttc 428  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  1739096 tccacctaacgcttgcgaagtagaaaattttcccttgcaaaataagcatgaaaaagtccttgaatccatttttttctcctcattcttgttctcatctttc 1738997  T
Q  429 cctttattgttgttatttggaaaacgagatgatgaaccaacttgcatagtgctaaaaggtctgtgctc 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1738996 cctttattgttgttatttggaaaacgagatgatgaaccaacttgcatagtgctaaaaggtttgtgctc 1738929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 30 - 497
Target Start/End: Complemental strand, 1744739 - 1744271
Alignment:
Q  30 attactactctccatgtttctcaaaccaacaagagaaggatttaatatatctttcaaatgcaaatcaccatttctatactcaaaagggccaaaaccatgt 129  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||    
T  1744739 attactactctccatgtttctcaaactaataagagaaggatttaatatatcttttaaatgaaaatcaccattactatactcaaaagggccaaaaccatgt 1744640  T
Q  130 ggggcaatcctagggttaatataagatggtttttgaatcatagattccattctaacaccgagtgccccgtaattagggggtgtnnnnnnngtgtttgggt 229  Q
    |||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||       |||||||| |    
T  1744639 ggggtaatcccggggttaatataagatggtttttgaatcatagattccattctaacaccgagtgccccataattagggggtgtaaaaagagtgtttggat 1744540  T
Q  230 agctaaaataagggttaagaagaggttgccctaaacctaattcatacctttgtttaagttgcttttgcaacgcacgttctgccttatgagcgttttggtg 329  Q
    | ||||||||||||||||||||||| ||| ||||||||||| | ||| | ||||||||||||||||| || |||||||| | ||||||||||||||||||    
T  1744539 aactaaaataagggttaagaagaggctgctctaaacctaatacgtacttctgtttaagttgcttttgtaatgcacgttccgtcttatgagcgttttggtg 1744440  T
Q  330 tccacctaacgcttgcgaagtagaaaattttcccttgcaaaataagcatgaaaaagtccttgaatcca-ttttttctcctcattcttcttctcatctttc 428  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| |||| |||||||| ||     
T  1744439 tccacctaacgcttgtgaagtagaaaattttcccttgcaaaataagcatgaaaaagaccttgaatccatttttttctcttcactcttgttctcatcgttt 1744340  T
Q  429 cctttattgttgttatttggaaaacgagatgatgaaccaacttgcatagtgctaaaaggtctgtgctcc 497  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||    
T  1744339 cctttattgttgttatttggaaaacaagatgatgaaccaacttgcatagtgctaaaagatttgtgctcc 1744271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 30 - 385
Target Start/End: Complemental strand, 1724807 - 1724452
Alignment:
Q  30 attactactctccatgtttctcaaaccaacaagagaaggatttaatatatctttcaaatgcaaatcaccatttctatactcaaaagggccaaaaccatgt 129  Q
    |||||||| |||||| |||||||||| |||||||||||| ||||| || |||| ||||  |||| |||||||  ||||| ||||||||||||||| ||||    
T  1724807 attactaccctccatatttctcaaactaacaagagaagggtttaacatctcttgcaaacccaaagcaccattattatacccaaaagggccaaaactatgt 1724708  T
Q  130 ggggcaatcctagggttaatataagatggtttttgaatcatagattccattctaacaccgagtgccccgtaattagggggtgtnnnnnnngtgtttgggt 229  Q
    | || ||||| |||| |||| |||||||| ||||||||||||||||||| |||||| ||||||  ||  |||| ||||| |||        | ||||| |    
T  1724707 gaggtaatcccagggctaatgtaagatggattttgaatcatagattccactctaacgccgagtttccgataataaggggatgtaaaaaagctatttggat 1724608  T
Q  230 agctaaaataagggttaagaagaggttgccctaaacctaattcatacctttgtttaagttgcttttgcaacgcacgttctgccttatgagcgttttggtg 329  Q
    | ||||||||| ||||||   ||||||  ||||||||||| ||||||||| ||||| |||||||||  || |||||||||||||||||||| ||||||||    
T  1724607 aactaaaataaaggttaaagtgaggttctcctaaacctaaatcataccttagtttacgttgcttttttaatgcacgttctgccttatgagcattttggtg 1724508  T
Q  330 tccacctaacgcttgcgaagtagaaaattttcccttgcaaaataagcatgaaaaag 385  Q
     || |||||||| || |||||||||||||||| |||||||||||||||||||||||    
T  1724507 ccctcctaacgcctgtgaagtagaaaattttctcttgcaaaataagcatgaaaaag 1724452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 118 - 471
Target Start/End: Complemental strand, 1760359 - 1759999
Alignment:
Q  118 ccaaaaccatgtggggcaatcctagggttaatataagatggtttttgaatcatagattccattctaacaccgagtgccccgtaattagggggtgtnnnnn 217  Q
    ||||||| |||||  | ||||||||||||||||| |||||||||||| ||||||| |||||||| ||||||||||||||  ||||  | ||||||         
T  1760359 ccaaaactatgtgacgtaatcctagggttaatatcagatggtttttggatcataggttccattccaacaccgagtgccctataatacgagggtgtaaaaa 1760260  T
Q  218 nngtgtttgggtagctaaaataagggttaagaagaggttgccctaaacctaattcatacctttgtttaagttgcttttgcaacgcacgttctgccttatg 317  Q
      || | ||| || |||||||||||||||| | |||||| ||||||||||||||| |||||||||||| |||||||||  || |||||||| |||||||     
T  1760259 aagtatctggataactaaaataagggttaaaatgaggttaccctaaacctaattcctacctttgtttacgttgcttttctaatgcacgttccgccttata 1760160  T
Q  318 agcgttttggtgtccacctaacgcttgcgaagtagaaaattttcccttgcaaaataagcatgaaaaagtccttgaatcc-attttttctcctcattcttc 416  Q
    ||| |||||||| || || ||||| || ||||||| |||||||| |||||||||||| |||||||||| |||||||||| | |||||||| |  |||||     
T  1760159 agcattttggtgccctcccaacgcctgtgaagtagtaaattttctcttgcaaaataaacatgaaaaagaccttgaatccaaatttttctctttgttcttg 1760060  T
Q  417 ttc------tcatctttccctttattgttgttatttggaaaacgagatgatgaaccaactt 471  Q
    |||      ||||||||| |||  ||||||||||||||||||| |||||||||||||||||    
T  1760059 ttctaattttcatctttctcttctttgttgttatttggaaaaccagatgatgaaccaactt 1759999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 146
Target Start/End: Complemental strand, 1725215 - 1725096
Alignment:
Q  33 actactctccatgtttctcaaaccaacaagag------aaggatttaatatatctttcaaatgcaaatcaccatttctatactcaaaagggccaaaacca 126  Q
    |||||||||||| |||||||||| ||||||||      |||| ||||| || |||| ||||  |||| ||||||| |||||| ||||||| |||||||||    
T  1725215 actactctccatatttctcaaactaacaagaggaagagaagggtttaacatctcttgcaaacacaaagcaccattactatacccaaaaggaccaaaacca 1725116  T
Q  127 tgtggggcaatcctagggtt 146  Q
    | ||||  ||||||||||||    
T  1725115 tttgggataatcctagggtt 1725096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 1763671 - 1763591
Alignment:
Q  90 caaatcaccatttctatactcaaaagggccaaaaccatgtgg-ggcaatcctagggttaatataagatggtttttgaatca 169  Q
    |||| ||||||| |||||  ||||||||||||||| |||||| || | || ||| ||||||||||||||||||||||||||    
T  1763671 caaaacaccattactatatccaaaagggccaaaactatgtggaggtagtcatagagttaatataagatggtttttgaatca 1763591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 1760621 - 1760555
Alignment:
Q  46 tttctcaaaccaacaagagaaggatttaatatatctttcaaatgcaaatcaccatttctatactcaa 112  Q
    ||||||| || |||||||||||| |||||||| |||||||||  |||| ||||||| ||||||||||    
T  1760621 tttctcagactaacaagagaagggtttaatatctctttcaaactcaaaacaccattactatactcaa 1760555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 1739563 - 1739510
Alignment:
Q  34 ctactctccatgtttctcaaaccaacaagagaaggatttaatatatctttcaaa 87  Q
    |||| |||||| |||||||||| |||||| ||||| ||||||||||||||||||    
T  1739563 ctaccctccatatttctcaaactaacaagcgaagggtttaatatatctttcaaa 1739510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 271 - 356
Target Start/End: Original strand, 1763481 - 1763566
Alignment:
Q  271 tcatacctttgtttaagttgcttttgcaacgcacgttctgccttatgagcgttttggtgtccacctaacgcttgcgaagtagaaaa 356  Q
    ||||||||||||||| |||||||||  || ||| |||| ||||||||||| ||||| || || |||||||  || |||||||||||    
T  1763481 tcatacctttgtttacgttgcttttctaatgcatgttccgccttatgagctttttgatgccctcctaacgtatgtgaagtagaaaa 1763566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 5e-45; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 30 - 485
Target Start/End: Complemental strand, 2023176 - 2022711
Alignment:
Q  30 attactactctccatgtttctcaaaccaacaagagaaggatttaatatatctttcaaatgcaaatcaccatttctatactcaaaagggccaaaaccatgt 129  Q
    |||||| | |||||| |||||||||| |||||||||||| |||||||| |||| ||||  |||| ||||||| | |||| ||||||| | ||||| ||||    
T  2023176 attactgccctccatatttctcaaactaacaagagaagggtttaatatctcttgcaaacccaaaccaccattaccatacccaaaaggtctaaaactatgt 2023077  T
Q  130 ggggcaatcctagggttaatataagatggtttttgaatcatagattccattctaacaccgagtgccccgtaattagggggtgtnnnnnnngtgtttgggt 229  Q
    || | ||| |||||||||||| ||  ||||||||||||||| ||||||||||||   || | ||| |   ||| |||| ||||       ||  |||| |    
T  2023076 ggagtaattctagggttaataaaaagtggtttttgaatcatggattccattctagtcccaattgcgctaaaataagggcgtgtaaaaagagtacttggat 2022977  T
Q  230 agctaaaataagggttaagaagaggttgccctaaacctaa---------ttcatacctttgtttaagttgcttttgcaacgcacgttctgccttatgagc 320  Q
    | ||||||||||||||||   |||||||||||||||| ||         |||||||||||||||| |||| ||||  |||| |||||| |||||||| ||    
T  2022976 aactaaaataagggttaaagtgaggttgccctaaaccaaaagcaccactttcatacctttgtttacgttgtttttctaacgtacgttcagccttatgggc 2022877  T
Q  321 gttttggtgtccacctaacgcttgcgaagtagaaaattttcccttgcaaaataagcatgaaaaagtccttgaatc-cattttttctcctcattcttcttc 419  Q
     || |||||||| ||||| |||||||||||||||||||||| |||||||||  | |||||||||| | |||||||  | || ||||| ||||  || |||    
T  2022876 attctggtgtcctcctaaggcttgcgaagtagaaaattttctcttgcaaaaacaacatgaaaaagactttgaatctgaattcttctcttcatcgttgttc 2022777  T
Q  420 tcatctttccctttattgttgttatttggaaaacgagatgatgaaccaacttgcatagtgctaaaa 485  Q
    || | ||||| || |||||||||| | ||||||||||| || ||||| ||||| | ||||| ||||    
T  2022776 tcgtttttcctttcattgttgttactaggaaaacgagacgaggaaccgacttgaaaagtgccaaaa 2022711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 46 - 477
Target Start/End: Complemental strand, 3167608 - 3167167
Alignment:
Q  46 tttctcaaaccaacaagagaaggatttaatatatctttcaaatgcaaatcaccatttctatactcaaaagggccaaaaccatgtggggcaatcctagggt 145  Q
    |||||||||| |||||| ||||| |||||||| |||| ||||   ||| |||||||   |||| ||||||||||||||| |||||| | |||||||||||    
T  3167608 tttctcaaactaacaagtgaagggtttaatatctcttgcaaagataaagcaccattatcatacccaaaagggccaaaactatgtggagtaatcctagggt 3167509  T
Q  146 taatataagatggtttttgaatcatagattccattctaacaccgagtgccccgtaattagggggtgtnnnnnnngtgtttgggtagctaaaataagggtt 245  Q
    ||||||||||||| ||||||||||| ||||||||||||   || ||  ||   |||| || ||||||       || ||||| || ||||||||||||||    
T  3167508 taatataagatggcttttgaatcatggattccattctagttccaagccccttataataagagggtgtaaaaagagtatttggataactaaaataagggtt 3167409  T
Q  246 aagaagaggttgccctaaacctaa---------ttcatacctttgtttaagttgcttttgcaacgcacgttctgccttatgagcgttttggtgtccacct 336  Q
    ||    ||||||||||||||| ||         ||||||| |||||||| |||| ||||  || |||||||| |||||||| || || || ||||| |||    
T  3167408 aaagtaaggttgccctaaaccaaaaacaccattttcatacttttgtttacgttgtttttctaaggcacgttcagccttatgggcattctgatgtcctcct 3167309  T
Q  337 aacgcttgcgaagtagaaaattttcccttgcaaaataagcatgaaaaagtccttgaatc-cattttttctcctcattcttcttctcatctttccctttat 435  Q
    |||||||| || ||||||||||||| |||||||||  | |||||||||| | |||||||  | || |||||  |||| || |||||||||||||||| ||    
T  3167308 aacgcttgtgatgtagaaaattttctcttgcaaaaacaacatgaaaaagactttgaatctgaattgttctcagcattgttgttctcatctttcccttcat 3167209  T
Q  436 tgttgttatttggaaaacgagatgatgaaccaacttgcatag 477  Q
    ||||||||||  |||||  | ||||||||||| |||| ||||    
T  3167208 tgttgttattacgaaaaaaatatgatgaaccaccttgaatag 3167167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 271 - 468
Target Start/End: Original strand, 3156896 - 3157094
Alignment:
Q  271 tcatacctttgtttaagttgcttttgcaacgcacgttctgccttatgagcgttttggtgtccacctaacgcttgcgaagtagaaaattttcccttgcaaa 370  Q
    ||||||||||||||  |||||||||  || |||||||| |||||||||||||| |||||||| || |||||||| ||||||||||||| || ||| ||||    
T  3156896 tcatacctttgtttccgttgcttttctaaagcacgttccgccttatgagcgttctggtgtcctcccaacgcttgtgaagtagaaaattgtctcttacaaa 3156995  T
Q  371 ataagcatgaaaaagtccttgaatcc-attttttctcctcattcttcttctcatctttccctttattgttgttatttggaaaacgagatgatgaaccaa 468  Q
    |  |||||||||||| |||||||||| | || ||||| |||||  | ||||||||||| |||| |||||| | ||| ||||||| ||| ||||||||||    
T  3156996 aggagcatgaaaaagaccttgaatccgaattcttctcttcattgatgttctcatcttttccttgattgttatcattaggaaaacaagacgatgaaccaa 3157094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 371
Target Start/End: Original strand, 3139182 - 3139282
Alignment:
Q  271 tcatacctttgtttaagttgcttttgcaacgcacgttctgccttatgagcgttttggtgtccacctaacgcttgcgaagtagaaaattttcccttgcaaa 370  Q
    ||||||||||||| | |||||||||  || || ||||| |||||||| ||||| || ||||| || ||||| || ||||||||||||| || ||||||||    
T  3139182 tcatacctttgttgacgttgcttttctaatgcccgttccgccttatgtgcgttctgatgtcctcccaacgcctgtgaagtagaaaattgtctcttgcaaa 3139281  T
Q  371 a 371  Q
    |    
T  3139282 a 3139282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 3139020 - 3139072
Alignment:
Q  118 ccaaaaccatgtggggcaatcctagggttaatataagatggtttttgaatcat 170  Q
    ||||||| |||||| | ||| |||||||||| ||||| |||||||||||||||    
T  3139020 ccaaaactatgtggagtaattctagggttaaaataaggtggtttttgaatcat 3139072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 3156752 - 3156804
Alignment:
Q  118 ccaaaaccatgtggggcaatcctagggttaatataagatggtttttgaatcat 170  Q
    |||||||  ||||||| |||| ||||| ||||||||| |||||||||||||||    
T  3156752 ccaaaactgtgtggggtaatcttagggctaatataaggtggtttttgaatcat 3156804  T

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Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 271 - 468
Target Start/End: Complemental strand, 23852260 - 23852062
Alignment:
Q  271 tcatacctttgtttaagttgcttttgcaacgcacgttctgccttatgagcgttttggtgtccacctaacgcttgcgaagtagaaaattttcccttgcaaa 370  Q
    ||||||||||||||  |||||||||  || | |||||| |||||||||||||| |||||||| || |||||||| |||||||||||||  | ||| ||||    
T  23852260 tcatacctttgtttccgttgcttttctaaagtacgttccgccttatgagcgttctggtgtcctcccaacgcttgagaagtagaaaattgcctcttacaaa 23852161  T
Q  371 ataagcatgaaaaagtccttgaatc-cattttttctcctcattcttcttctcatctttccctttattgttgttatttggaaaacgagatgatgaaccaa 468  Q
    |  |||||||||| |  ||||||||  | || ||||| |||||  | ||||||||||| |||| ||||||||   | ||||||| ||| ||||||||||    
T  23852160 aggagcatgaaaaggatcttgaatctgaattcttctcttcattgatgttctcatcttttccttgattgttgtcggtaggaaaacaagacgatgaaccaa 23852062  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 7484275 - 7484341
Alignment:
Q  122 aaccatgtggggcaatcctagggttaatataagatggtttttgaatcatagattccattctaacacc 188  Q
    |||||| ||||| ||||||||||||| |||||| ||||||||||||  | || ||||||||||||||    
T  7484275 aaccatttggggtaatcctagggttagtataaggtggtttttgaattgttgactccattctaacacc 7484341  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 369
Target Start/End: Original strand, 7491190 - 7491288
Alignment:
Q  271 tcatacctttgtttaagttgcttttgcaacgcacgttctgccttatgagcgttttggtgtccacctaacgcttgcgaagtagaaaattttcccttgcaa 369  Q
    |||||||||| |||| |||| |||| |||||||||||| |||||||| || ||||| || || |||||  ||||  ||||||||||||  |||||||||    
T  7491190 tcatacctttctttacgttgtttttccaacgcacgttccgccttatgggcattttgatgccctcctaagccttggaaagtagaaaattgccccttgcaa 7491288  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 369
Target Start/End: Original strand, 7498911 - 7499009
Alignment:
Q  271 tcatacctttgtttaagttgcttttgcaacgcacgttctgccttatgagcgttttggtgtccacctaacgcttgcgaagtagaaaattttcccttgcaa 369  Q
    |||||||||| ||| ||||| |||| ||| ||||||||||||||||| || ||||| || || |||||  ||||  ||||||||||||  |||||||||    
T  7498911 tcatacctttcttttagttgtttttccaatgcacgttctgccttatgggcattttgatgccctcctaagccttggaaagtagaaaattgccccttgcaa 7499009  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 402 - 483
Target Start/End: Original strand, 7484568 - 7484649
Alignment:
Q  402 ttctcctcattcttcttctcatctttccctttattgttgttatttggaaaacgagatgatgaaccaacttgcatagtgctaa 483  Q
    ||||| || ||||||||||||||||||| || |||| |||||||  |||||  ||||| |||||||||||| |||| |||||    
T  7484568 ttctcttcgttcttcttctcatctttcctttcattgctgttattatgaaaagaagatgttgaaccaacttgaatagggctaa 7484649  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 395
Target Start/End: Original strand, 9012087 - 9012160
Alignment:
Q  322 ttttggtgtccacctaacgcttgcgaagtagaaaattttcccttgcaaaataagcatgaaaaagtccttgaatc 395  Q
    |||||||| ||||| |||||||| | ||||||||||||| |||||||| |   ||||||||| | |||||||||    
T  9012087 ttttggtgcccacccaacgcttgtgcagtagaaaattttgccttgcaataggtgcatgaaaatgaccttgaatc 9012160  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 9011902 - 9011938
Alignment:
Q  149 tataagatggtttttgaatcatagattccattctaac 185  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  9011902 tataaggtggtttttgaatcattgattccattctaac 9011938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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