View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0753_low_43 (Length: 251)
Name: NF0753_low_43
Description: NF0753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0753_low_43 |
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| [»] chr7 (7 HSPs) |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 8428216 - 8428456
Alignment:
| Q |
13 |
aatatggtgaattgaacatttaaaatttaactattattattagaaa-taaaagaaactaaatatcagtattgtctcatcaaacgttgaattgaaacataa |
111 |
Q |
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| T |
8428216 |
aatatggtgaattgaacatttaaaatttaacaattattattataaaatgaaagaaactcaatatcaatattgtctcatcaaacattgaattgaaacataa |
8428315 |
T |
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| Q |
112 |
tatgatacatttagattatcatgatgacctaattgacctaaaaattttagaatatgtttcatgttcataat-agatattgagccggataaaaataataaa |
210 |
Q |
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| T |
8428316 |
tatgatacatttagattatcatggtgacctaattgacctaaaaaatttagaatatgtttcatggtcataataagatattgagccggataaaaataataaa |
8428415 |
T |
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| Q |
211 |
tacaatcatatcatatgtttaatgctcacatgacaacaacc |
251 |
Q |
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| T |
8428416 |
tacaatcatatcatatgtttaatgctcacatgacaacaacc |
8428456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 22 - 251
Target Start/End: Complemental strand, 8451219 - 8450981
Alignment:
| Q |
22 |
aattgaacatttaaaatttaactattattattagaaa-taaaagaaactaaatatcagtat----tgtctcatcaaacgttgaattgaaacataatatga |
116 |
Q |
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| T |
8451219 |
aattgaacatttaaaatttaacaattattattataaaatgaaagaaactcaatatcagtatatattgtctcatcaaacattgaattcaaacataatatga |
8451120 |
T |
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| Q |
117 |
tacatttagattat---catgatgacctaattgacctaaaaattttagaatatgtttcatgttcataata-gatattgagccggataaaaataataaata |
212 |
Q |
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| T |
8451119 |
tatatttagattattatcatggtgacctaattgacctaaaaaatttagaatatgtttcatggtcataataagatattgagccggataaaaataataaata |
8451020 |
T |
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| Q |
213 |
caatcatatcatatgtttaatgctcacatgacaacaacc |
251 |
Q |
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| T |
8451019 |
caatcatatcatatgtttaatgctcacatgacaacaacc |
8450981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 8408971 - 8408863
Alignment:
| Q |
13 |
aatatggtgaattgaacatttaaaatttaactattattattagaaa-taaaagaaactaaatatcagtattgtctcatcaaacgttgaattgaaacataa |
111 |
Q |
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| T |
8408971 |
aatatggtgaattgaacatttaaaatttaacaattattattataaaataaaagaaactcaatatctgtattgtctcatcaaacattgaattgagacatga |
8408872 |
T |
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| Q |
112 |
tatgataca |
120 |
Q |
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| T |
8408871 |
tatgataca |
8408863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 7916047 - 7916111
Alignment:
| Q |
56 |
aaataaaagaaactaaatatcagtattgtctcatcaaacgttgaattgaaacataatatgataca |
120 |
Q |
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| T |
7916047 |
aaataaaagaaactcaatatcagcattatctcatcaaacattgaattgagacataatatgataca |
7916111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 8350025 - 8349982
Alignment:
| Q |
183 |
agatattgagccggataaaaataataaatacaatcatatcatat |
226 |
Q |
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| T |
8350025 |
agatattgagccggattaaaatgataaatacaatcatatcatat |
8349982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 8481086 - 8481144
Alignment:
| Q |
183 |
agatattgagccggataaaaataataaatacaatcatatcatatgtttaatgctcacat |
241 |
Q |
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| T |
8481086 |
agatattgagccggattaaaatgataaatacaattatatcatgtgtttgatgttcacat |
8481144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 8437799 - 8437750
Alignment:
| Q |
71 |
aatatcagtattgtctcatcaaacgttgaattgaaacataatatgataca |
120 |
Q |
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| T |
8437799 |
aatatcggtattgtctcattaaacattgaattgagacatgatatgataca |
8437750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 73153 - 73217
Alignment:
| Q |
56 |
aaataaaagaaactaaatatcagtattgtctcatcaaacgttgaattgaaacataatatgataca |
120 |
Q |
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| T |
73153 |
aaatgaaagaaattcaatatcagtattttctcattaaatattgaattgagacatgatatgataca |
73217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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