View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0753_low_5 (Length: 536)
Name: NF0753_low_5
Description: NF0753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0753_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 82 - 444
Target Start/End: Complemental strand, 3879475 - 3879113
Alignment:
| Q |
82 |
atgaagcagaaacatacttgcgacagtacgccaatctaatattcttcaaacgtggaagatccaacgacgcttaagtcaatagactgcaactgcggagtta |
181 |
Q |
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| T |
3879475 |
atgaagcagaaacatacttgcgacagtacgccaatctaatattcttcaaatgtggaagatccaacgacgctcaagtcaatagactgcaactgcggagtta |
3879376 |
T |
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| Q |
182 |
caaaacctgcattggcggggtgataaaatgtattaatcgtaatactcatgaattcagacatgtcattaatatcaatatctgggacagataaaatacctcc |
281 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3879375 |
caaaacctgcattggcggggtggttaaatgtattaatcgtaatactcatgaattcagacatgtcattaatatcaatatctgggacagataaaatacctcc |
3879276 |
T |
|
| Q |
282 |
aacatagagctatgagctatagcagccattgatgcagaagtgatgccctcgcagctatgaagccttagaattgtcaacattgtcatccgaaccgacttaa |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3879275 |
aacatagagctatgagctatagcagccattgatgcagaagtgatgccctcgcagctatgaagccttagaattgtcaacattgtcatccgaaccgacttaa |
3879176 |
T |
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| Q |
382 |
aagagaaaagccatatactttagttcaaaatacaagcttacatatgcaaaaaagcgagtatac |
444 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3879175 |
aagagaaaagccatatactttagttcaaaatacaagcttacatatgcaaaaaagcgagtatac |
3879113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 82 - 389
Target Start/End: Complemental strand, 3865493 - 3865188
Alignment:
| Q |
82 |
atgaagcagaaacatacttgcgacagtacgccaatctaatattcttcaaacgtggaagatccaacgacgcttaagtcaatagactgcaactgcggagtta |
181 |
Q |
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|
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||| || || | |
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| T |
3865493 |
atgaagcagaaacatacttgcgacagtacaccaatctaatattctgcaaacgtggaagatccaacgacaccgaagtcaatagactgcaattgtcaagctc |
3865394 |
T |
|
| Q |
182 |
caaaacctgcattggcggggtgataaaatgtattaatcgtaatactcatgaattcagacatgtcattaatatcaatatctgggacagataaaatacctcc |
281 |
Q |
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|||||||||||||||| | | || ||||| | || |||||||| ||||||||||| ||| ||||||||||||||||| ||| |||| |||||||| |
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| T |
3865393 |
caaaacctgcattggcag--ttatgtcatgtactcgtcctaatactcgggaattcagacaagtcgttaatatcaatatctggaacaaataacatacctcc |
3865296 |
T |
|
| Q |
282 |
aacatagagctatgagctatagcagccattgatgcagaagtgatgccctcgcagctatgaagccttagaattgtcaacattgtcatccgaaccgacttaa |
381 |
Q |
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|||||||| || |||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||| | ||||| ||||||| |
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| T |
3865295 |
aacatagaactgtgagctattgcagccattgacgcagaagtgatgccctcacagctatgaagtcttagaatggtcaacattgggagtcgaacagacttaa |
3865196 |
T |
|
| Q |
382 |
aagagaaa |
389 |
Q |
| |
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|| ||||| |
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| T |
3865195 |
aaaagaaa |
3865188 |
T |
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