View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0753_low_7 (Length: 466)

Name: NF0753_low_7
Description: NF0753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0753_low_7
NF0753_low_7
[»] chr1 (10 HSPs)
chr1 (4-228)||(44236905-44237129)
chr1 (226-437)||(44236522-44236733)
chr1 (255-332)||(23895233-23895310)
chr1 (275-347)||(33339501-33339573)
chr1 (242-284)||(28075670-28075712)
chr1 (242-332)||(29794018-29794108)
chr1 (300-338)||(37841940-37841978)
chr1 (242-332)||(43029497-43029586)
chr1 (267-332)||(46504313-46504378)
chr1 (376-424)||(3597270-3597318)
[»] chr5 (11 HSPs)
chr5 (242-337)||(20982226-20982321)
chr5 (242-332)||(26516182-26516272)
chr5 (248-347)||(35135743-35135842)
chr5 (266-329)||(4991042-4991105)
chr5 (248-319)||(37611300-37611371)
chr5 (248-319)||(37788030-37788101)
chr5 (248-332)||(35963138-35963222)
chr5 (242-337)||(32172537-32172632)
chr5 (265-347)||(37063155-37063237)
chr5 (249-335)||(37618932-37619018)
chr5 (242-294)||(6725121-6725173)
[»] chr3 (9 HSPs)
chr3 (255-330)||(2070952-2071027)
chr3 (275-337)||(20349567-20349629)
chr3 (242-295)||(20874433-20874486)
chr3 (248-337)||(38462171-38462260)
chr3 (266-338)||(36445640-36445712)
chr3 (257-312)||(28842973-28843028)
chr3 (242-284)||(4534485-4534527)
chr3 (242-332)||(43116524-43116614)
chr3 (248-332)||(21862272-21862356)
[»] chr8 (16 HSPs)
chr8 (261-347)||(28769420-28769506)
chr8 (255-337)||(39392752-39392834)
chr8 (248-337)||(14482092-14482181)
chr8 (242-330)||(27320200-27320288)
chr8 (242-321)||(12972740-12972819)
chr8 (242-341)||(31884478-31884577)
chr8 (259-337)||(6918270-6918348)
chr8 (255-349)||(8799302-8799396)
chr8 (242-332)||(10727081-10727171)
chr8 (242-347)||(4558682-4558787)
chr8 (267-319)||(3645925-3645977)
chr8 (242-285)||(2093169-2093212)
chr8 (242-313)||(29592647-29592718)
chr8 (250-332)||(1117238-1117320)
chr8 (375-428)||(29169921-29169974)
chr8 (376-428)||(14949899-14949951)
[»] scaffold0590 (1 HSPs)
scaffold0590 (243-346)||(1156-1259)
[»] scaffold0275 (1 HSPs)
scaffold0275 (243-346)||(2716-2819)
[»] chr7 (12 HSPs)
chr7 (242-337)||(27481385-27481480)
chr7 (255-337)||(49060437-49060519)
chr7 (242-330)||(2223033-2223120)
chr7 (254-332)||(26935646-26935724)
chr7 (242-331)||(28702641-28702733)
chr7 (270-319)||(27389295-27389344)
chr7 (248-320)||(37497868-37497940)
chr7 (266-312)||(1431424-1431470)
chr7 (242-303)||(5499288-5499349)
chr7 (242-343)||(5628651-5628752)
chr7 (255-292)||(39566324-39566361)
chr7 (266-337)||(30133959-30134028)
[»] chr6 (12 HSPs)
chr6 (255-338)||(8349754-8349837)
chr6 (248-332)||(10452456-10452540)
chr6 (377-428)||(32577971-32578022)
chr6 (260-337)||(2514604-2514681)
chr6 (248-337)||(32975868-32975957)
chr6 (242-332)||(2023725-2023815)
chr6 (242-295)||(4247217-4247270)
chr6 (242-323)||(28130030-28130111)
chr6 (242-295)||(30865358-30865411)
chr6 (267-332)||(33068657-33068722)
chr6 (259-347)||(7354105-7354193)
chr6 (255-295)||(21919971-21920011)
[»] chr2 (10 HSPs)
chr2 (255-337)||(38239642-38239724)
chr2 (242-328)||(11393466-11393552)
chr2 (242-328)||(11410127-11410213)
chr2 (255-337)||(35459807-35459889)
chr2 (256-337)||(25609695-25609775)
chr2 (248-337)||(31461328-31461417)
chr2 (373-428)||(10285890-10285945)
chr2 (242-285)||(14316962-14317005)
chr2 (249-337)||(10198569-10198657)
chr2 (255-295)||(43456818-43456858)
[»] chr4 (7 HSPs)
chr4 (242-347)||(7749163-7749268)
chr4 (255-332)||(485978-486055)
chr4 (268-347)||(47970228-47970307)
chr4 (242-337)||(51555958-51556053)
chr4 (242-323)||(41241649-41241730)
chr4 (255-332)||(46796915-46796992)
chr4 (242-294)||(24193469-24193521)
[»] scaffold0110 (1 HSPs)
scaffold0110 (242-317)||(34023-34098)
[»] scaffold0455 (1 HSPs)
scaffold0455 (242-323)||(8617-8698)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-116; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 4 - 228
Target Start/End: Complemental strand, 44237129 - 44236905
Alignment:
Q  4 gaagaaacaaagggccggtactccaacatttagctcatctctaatcaacgtagaactaactaatcacacttgaattccagcacagtccagtcctacattg 103  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44237129 gaagtaacaaagggccggtactccaacatttagctcatctctaatcaacgtagaactaactaatcacacttgaattccaacacagtccagtcctacattg 44237030  T
Q  104 gttgcaatgttttaattctacttctacaactctacacgaaactttttgtcattaaggggaggaagggagctaaactctcagttattgataatcatcttga 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44237029 gttgcaatgttttaattctacttctacaactctacacgaaactttttgtcgttaaggggaggaagggagctaaactctcagttattgataatcatcttga 44236930  T
Q  204 ttttcctccatcactatcaaaacta 228  Q
    |||||||||||||||||||||||||    
T  44236929 ttttcctccatcactatcaaaacta 44236905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 226 - 437
Target Start/End: Complemental strand, 44236733 - 44236522
Alignment:
Q  226 ctaactggttctccaattggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatg 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44236733 ctaactggttctccaattggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatg 44236634  T
Q  326 ataaaatgaagttgaactatttccctaggttctcctaattcctaaaaaacttatggaaataagctaaaaatagctcaaggatatgtcataagttattttc 425  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44236633 ataaaataaagttgaactgtttccctaggttctcctaattcctaaaaaacttatggaaataagctaaaaatagctcaaggatatgtcataagttattttc 44236534  T
Q  426 atacgatttatc 437  Q
    ||||||||||||    
T  44236533 atacgatttatc 44236522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 332
Target Start/End: Original strand, 23895233 - 23895310
Alignment:
Q  255 ttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 332  Q
    ||||||||||||||| ||||||||  ||||||| ||||||  || |||| |||||||| |||||||||| ||||||||    
T  23895233 ttaattaagcacttaaagcataagcccttatcatataagttattatgtataagctatttctataacaaaagataaaat 23895310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 347
Target Start/End: Complemental strand, 33339573 - 33339501
Alignment:
Q  275 taagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagttgaactattt 347  Q
    |||||| |||||| ||| |||||| |||| |||||||| ||||| |||| |||||||||||||| ||||||||    
T  33339573 taagtggttatcatataggtgtttatgtataagctatttctataccaaaagataaaatgaagttaaactattt 33339501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 28075670 - 28075712
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgctta 284  Q
    ||||| |||||| |||||||||||||||||||| |||||||||    
T  28075670 ttggataaacaatttaattaagcacttatagcacaagtgctta 28075712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 332
Target Start/End: Complemental strand, 29794108 - 29794018
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 332  Q
    ||||| |||||  |||||||||| ||||||||||||||| || ||| ||| |||||| |||| | ||||||  | ||||||| ||||||||    
T  29794108 ttggataaacagcttaattaagcgcttatagcataagtgtttttcatatatgtgtttatgtataggctatttttgtaacaaaagataaaat 29794018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 37841940 - 37841978
Alignment:
Q  300 tgtagaagctattcctataacaaatgataaaatgaagtt 338  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  37841940 tgtataagctattcctataacaaatgataaaataaagtt 37841978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 332
Target Start/End: Complemental strand, 43029586 - 43029497
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 332  Q
    ||||| |||||| |||||||||||||| ||||||||||| |||| | || |||| || |||| || ||||| ||| |||||| ||||||||    
T  43029586 ttggataaacaatttaattaagcacttttagcataagtgattat-atatgagtgcttatgtataacctatttctacaacaaaagataaaat 43029497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 332
Target Start/End: Complemental strand, 46504378 - 46504313
Alignment:
Q  267 ttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 332  Q
    ||||||||||||  ||||||| |||||||||||| || || |||||  ||||||||| ||||||||    
T  46504378 ttatagcataagctcttatcatataagtgtttgtctataaactatttttataacaaaagataaaat 46504313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 424
Target Start/End: Complemental strand, 3597318 - 3597270
Alignment:
Q  376 ttatggaaataagctaaaaatagctcaaggatatgtcataagttatttt 424  Q
    ||||||||||||||| ||||||||| | ||  |||||||||||||||||    
T  3597318 ttatggaaataagctgaaaatagcttatggccatgtcataagttatttt 3597270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 242 - 337
Target Start/End: Complemental strand, 20982321 - 20982226
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 337  Q
    ||||| |||||| || ||||||  |||||||||||||||||||||| ||||||| || |||| |||||||| |||||||||| |||||||| ||||    
T  20982321 ttggataaacaacttcattaagtgcttatagcataagtgcttatcatataagtgcttatgtataagctatttctataacaaaggataaaataaagt 20982226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 242 - 332
Target Start/End: Original strand, 26516182 - 26516272
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 332  Q
    ||||| |||||| |||||||||| ||||||||||||| |||||||| ||||||| || |||| |||||||| ||| |||||| ||||||||    
T  26516182 ttggataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctatttctaaaacaaaagataaaat 26516272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 248 - 347
Target Start/End: Complemental strand, 35135842 - 35135743
Alignment:
Q  248 aaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagttgaactattt 347  Q
    |||||| |||||| | |||| |||||||||||||||| || |||||||||| |||| ||| |||| |||||||||| |||||||| ||||  ||||||||    
T  35135842 aaacaacttaattcaacactcatagcataagtgcttaacatataagtgtttatgtataagatatttctataacaaaagataaaataaagtcaaactattt 35135743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 329
Target Start/End: Complemental strand, 4991105 - 4991042
Alignment:
Q  266 cttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataa 329  Q
    ||||||||||||| | |||||| ||||||||||||||| ||||||||  ||||||||| |||||    
T  4991105 cttatagcataagcgattatcatataagtgtttgtgtataagctatttttataacaaaagataa 4991042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 319
Target Start/End: Complemental strand, 37611371 - 37611300
Alignment:
Q  248 aaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataa 319  Q
    |||||| ||||||||||||||||||||||| || || ||| ||||||| || |||| |||||||| ||||||    
T  37611371 aaacaatttaattaagcacttatagcataaatggttgtcatataagtgcttatgtaaaagctatttctataa 37611300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 319
Target Start/End: Complemental strand, 37788101 - 37788030
Alignment:
Q  248 aaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataa 319  Q
    |||||| ||||||||||||||||||||||| || || ||| ||||||| || |||| |||||||| ||||||    
T  37788101 aaacaatttaattaagcacttatagcataaatggttgtcatataagtgcttatgtaaaagctatttctataa 37788030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 332
Target Start/End: Original strand, 35963138 - 35963222
Alignment:
Q  248 aaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 332  Q
    |||||| |||| ||||||||||||||||||| | |||||| ||||||| ||||||| ||  |||| |||||| ||| ||| ||||    
T  35963138 aaacaacttaactaagcacttatagcataagcgattatcaaataagtgcttgtgtataaattatttctataagaaaagatcaaat 35963222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 337
Target Start/End: Original strand, 32172537 - 32172632
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 337  Q
    ||||| ||||||  ||||||||| |||| |||||||| |||||||| | ||| | || |||| || ||||| ||| |||||| |||||||||||||    
T  32172537 ttggataaacaacataattaagcgcttacagcataagcgcttatcatacaagagcttatgtataaactatttctacaacaaaagataaaatgaagt 32172632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 347
Target Start/End: Complemental strand, 37063237 - 37063155
Alignment:
Q  265 acttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagttgaactattt 347  Q
    ||||||||||||| ||||| ||| |||| || || |||| || ||||| |||||||||| |||||||| ||||  ||||||||    
T  37063237 acttatagcataaatgcttgtcatataaatgcttatgtataaactatttctataacaaaagataaaataaagtcaaactattt 37063155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 37619018 - 37618932
Alignment:
Q  249 aacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaa 335  Q
    ||||| |||||||||||| || |||||||||| |||||  ||||||| || || | |||||||| |||| | ||| |||||||||||    
T  37619018 aacaacttaattaagcacatacagcataagtgtttatcgtataagtgcttatgcaaaagctatttctattataaaagataaaatgaa 37618932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 6725121 - 6725173
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagt 294  Q
    ||||| ||| || |||||||||  |||||||||||||||||||||| ||||||    
T  6725121 ttggataaataatttaattaagtgcttatagcataagtgcttatcatataagt 6725173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 255 - 330
Target Start/End: Original strand, 2070952 - 2071027
Alignment:
Q  255 ttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaa 330  Q
    ||||||||||||||||||||||||| |||||||||||||||||  |||| |||||||| || ||||||| ||||||    
T  2070952 ttaattaagcacttatagcataagtacttatcacataagtgttaatgtataagctatttctttaacaaaagataaa 2071027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 20349629 - 20349567
Alignment:
Q  275 taagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 337  Q
    ||||||||||||| ||||||||||||||| |||||||| |  ||||||| |||||||||||||    
T  20349629 taagtgcttatcatataagtgtttgtgtataagctatttcagtaacaaaggataaaatgaagt 20349567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 20874486 - 20874433
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtg 295  Q
    ||||| |||||| ||||||||||||||||||||||| ||| ||||| |||||||    
T  20874486 ttggataaacaacttaattaagcacttatagcataaatgcatatcatataagtg 20874433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 248 - 337
Target Start/End: Original strand, 38462171 - 38462260
Alignment:
Q  248 aaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 337  Q
    ||||||||||||||||| | || |||||||   ||||||| |||||||||| | || |||||||| ||||| |||| |||||||| ||||    
T  38462171 aaacaagttaattaagcgcctaaagcataaacacttatcatataagtgtttatttataagctatttctataccaaaagataaaataaagt 38462260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 338
Target Start/End: Original strand, 36445640 - 36445712
Alignment:
Q  266 cttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagtt 338  Q
    ||||| |||||||||||||||| || ||| ||| |||| |||||||| |||||||||| || ||||| |||||    
T  36445640 cttattgcataagtgcttatcatatgagtttttatgtataagctatttctataacaaaagagaaaataaagtt 36445712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 28843028 - 28842973
Alignment:
Q  257 aattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctatt 312  Q
    ||||||||||||||| |||||| |||||||| ||||||| || |||| ||||||||    
T  28843028 aattaagcacttatatcataagcgcttatcatataagtgcttatgtataagctatt 28842973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 4534527 - 4534485
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgctta 284  Q
    ||||| |||||| |||||||||||||||||| |||||||||||    
T  4534527 ttggataaacaacttaattaagcacttatagtataagtgctta 4534485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 332
Target Start/End: Complemental strand, 43116614 - 43116524
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 332  Q
    ||||| |||||| |||||| ||   ||||||||||| || |||||| | |||||||| |||  |||||||| |||||||||| ||||||||    
T  43116614 ttggataaacaacttaatttagtgtttatagcataaatgtttatcatacaagtgtttatgtgtaagctatttctataacaaaagataaaat 43116524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 332
Target Start/End: Complemental strand, 21862356 - 21862272
Alignment:
Q  248 aaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 332  Q
    |||||| | |||||||||||||||||||||  | |||||  ||||||| ||| ||| ||||| || |||| ||||| ||||||||    
T  21862356 aaacaactcaattaagcacttatagcataaacgtttatcttataagtgcttgcgtataagctgtttctattacaaaagataaaat 21862272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 261 - 347
Target Start/End: Complemental strand, 28769506 - 28769420
Alignment:
Q  261 aagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagttgaactattt 347  Q
    ||||| ||||||||||||||||||||| |||| || || |||| |||||||||||||||||||  ||||||| ||||  ||||||||    
T  28769506 aagcatttatagcataagtgcttatcatataaatgcttatgtataagctattcctataacaaactataaaattaagtcaaactattt 28769420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 337
Target Start/End: Complemental strand, 39392834 - 39392752
Alignment:
Q  255 ttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 337  Q
    ||||||||||| ||||||||||||||||||||| |||||||  | |||| || ||||| |||||||||| |||||||| ||||    
T  39392834 ttaattaagcatttatagcataagtgcttatcatataagtggctatgtataaactatttctataacaaaagataaaataaagt 39392752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 337
Target Start/End: Original strand, 14482092 - 14482181
Alignment:
Q  248 aaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 337  Q
    |||||| |||||||||  |||||||||| ||||||||||| ||||||| || |||| || ||||| |||||||||| |||||||| ||||    
T  14482092 aaacaatttaattaagttcttatagcattagtgcttatcatataagtgcttatgtataaactatttctataacaaaagataaaataaagt 14482181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 27320200 - 27320288
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaa 330  Q
    ||||| |||||| |||||||||| ||||||||||||   ||||||||||||||| ||  ||| |||||||||||||| |||| ||||||    
T  27320200 ttggaaaaacaatttaattaagcgcttatagcataaacacttatcacataagtgcttacgtataagctattcctatagcaaaagataaa 27320288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 321
Target Start/End: Original strand, 12972740 - 12972819
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataaca 321  Q
    |||||||||||| |||||||||| |||||||||||||   |||||| ||||||| || |||| |||||||| | ||||||    
T  12972740 ttggacaaacaacttaattaagcgcttatagcataagcatttatcatataagtgcttatgtataagctatttcaataaca 12972819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 341
Target Start/End: Original strand, 31884478 - 31884577
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagttgaa 341  Q
    ||||| |||||| | |||||||||||||||||||||| |||||||| | |||||  | |||| ||| |||| ||||||||||  ||||||| || |||||    
T  31884478 ttggataaacaactcaattaagcacttatagcataagcgcttatcatacaagtgcatatgtataagttatttctataacaaaatataaaatcaaattgaa 31884577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 337
Target Start/End: Complemental strand, 6918348 - 6918270
Alignment:
Q  259 ttaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 337  Q
    ||||||||||||| | ||||||||||| | |||||||||||| || ||||||||  ||||| ||| |||||||| ||||    
T  6918348 ttaagcacttataacttaagtgcttataatataagtgtttgtatataagctatttatataataaaagataaaataaagt 6918270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 349
Target Start/End: Original strand, 8799302 - 8799396
Alignment:
Q  255 ttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagttgaactatttcc 349  Q
    |||||||||||||||||||| || ||||||||| ||| ||| |||| |  | | |||| |||||||||| |||||||| ||||  ||||||||||    
T  8799302 ttaattaagcacttatagcacaaatgcttatcatatatgtgcttgtatgtatgttatttctataacaaaagataaaataaagtcaaactatttcc 8799396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 332
Target Start/End: Original strand, 10727081 - 10727171
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 332  Q
    |||||||| ||| ||||||||||| |||||||||||||| | |||| ||||||| || || | |||||||| ||||| |||| ||| ||||    
T  10727081 ttggacaaccaacttaattaagcatttatagcataagtgttcatcatataagtgcttatgcataagctatttctatagcaaaagatgaaat 10727171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 242 - 347
Target Start/End: Original strand, 4558682 - 4558787
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagttgaa 341  Q
    ||||| |||||| ||||||| || ||||||||||||  | |||| |  ||||||||| |||| |||||||| |||||| ||| |||||||| ||||| ||    
T  4558682 ttggataaacaacttaattacgcgcttatagcataaacgtttattatgtaagtgtttatgtataagctatttctataataaaagataaaataaagttaaa 4558781  T
Q  342 ctattt 347  Q
     |||||    
T  4558782 ttattt 4558787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 319
Target Start/End: Complemental strand, 3645977 - 3645925
Alignment:
Q  267 ttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataa 319  Q
    |||||||||||||| |||||| ||||||| ||||||| |||||||| ||||||    
T  3645977 ttatagcataagtgtttatcatataagtgcttgtgtataagctatttctataa 3645925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 285
Target Start/End: Original strand, 2093169 - 2093212
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttat 285  Q
    |||||||||||| |||||||||| ||||| ||||||||||||||    
T  2093169 ttggacaaacaacttaattaagcgcttatcgcataagtgcttat 2093212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 313
Target Start/End: Complemental strand, 29592718 - 29592647
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattc 313  Q
    ||||| |||||| ||| ||| ||| ||||||||||||| ||||||| ||||||| || |||| |||||||||    
T  29592718 ttggataaacaacttagttatgcatttatagcataagttcttatcatataagtgcttttgtataagctattc 29592647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 1117238 - 1117320
Alignment:
Q  250 acaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 332  Q
    |||| ||||||||| ||||||| ||| ||||||||||| ||||||| || |||  ||| | || ||||||| |||||||||||    
T  1117238 acaacttaattaagtacttatatcattagtgcttatcatataagtgattatgtgtaagttgtttctataacgaatgataaaat 1117320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 428
Target Start/End: Complemental strand, 29169974 - 29169921
Alignment:
Q  375 cttatggaaataagctaaaaatagctcaaggatatgtcataagttattttcata 428  Q
    ||||||||||| |||||||||||||| | |||||||||||| | | ||||||||    
T  29169974 cttatggaaatgagctaaaaatagcttatggatatgtcatatgctgttttcata 29169921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 428
Target Start/End: Original strand, 14949899 - 14949951
Alignment:
Q  376 ttatggaaataagctaaaaatagctcaaggatatgtcataagttattttcata 428  Q
    |||| |||||||||| |||| |||| | ||| |||||||||||||||||||||    
T  14949899 ttatagaaataagctgaaaacagcttatggacatgtcataagttattttcata 14949951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 346
Target Start/End: Complemental strand, 1259 - 1156
Alignment:
Q  243 tggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagttgaac 342  Q
    |||| |||||| ||||||||| |||||||||||||  |  ||||| ||||||| || |||| |||||||| |||||||||| |||||||| ||||  |||    
T  1259 tggataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaac 1160  T
Q  343 tatt 346  Q
    ||||    
T  1159 tatt 1156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 346
Target Start/End: Original strand, 2716 - 2819
Alignment:
Q  243 tggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagttgaac 342  Q
    |||| |||||| ||||||||| |||||||||||||  |  ||||| ||||||| || |||| |||||||| |||||||||| |||||||| ||||  |||    
T  2716 tggataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaac 2815  T
Q  343 tatt 346  Q
    ||||    
T  2816 tatt 2819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 337
Target Start/End: Complemental strand, 27481480 - 27481385
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 337  Q
    ||||| |||||| ||||||| |  |||||||||||| || |||| | |||||||||| |||| |||||||| |||||||||| ||||||| |||||    
T  27481480 ttggataaacaacttaattaggtgcttatagcataaatgtttattatataagtgtttatgtataagctatttctataacaaaggataaaacgaagt 27481385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 255 - 337
Target Start/End: Original strand, 49060437 - 49060519
Alignment:
Q  255 ttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 337  Q
    |||||||||||||||||| ||||  |||||||| |||||| ||| |||| |||||||| ||||||||||  ||||||| ||||    
T  49060437 ttaattaagcacttatagtataatggcttatcatataagtatttatgtataagctatttctataacaaaaaataaaataaagt 49060519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 2223033 - 2223120
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaa 330  Q
    ||||| |||||| ||||||| ||| ||||||||||| | ||||||  |||||||||| |||| |||||||| |||||||||| ||||||    
T  2223033 ttggataaacaatttaattaggcatttatagcataaat-cttatcgtataagtgtttatgtataagctatttctataacaaaagataaa 2223120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 332
Target Start/End: Complemental strand, 26935724 - 26935646
Alignment:
Q  254 gttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 332  Q
    ||||||||||| |||||| |||||| | |||||| ||||||| || |||  ||||||||  ||||||||||||||||||    
T  26935724 gttaattaagcgcttataccataagagattatcatataagtgcttttgtgtaagctatttttataacaaatgataaaat 26935646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 331
Target Start/End: Original strand, 28702641 - 28702733
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataag---tgtttgtgtagaagctattcctataacaaatgataaaa 331  Q
    ||||| |||||| ||||||||||||||||||||||||||| || || | |||   | ||| |||| |||||||| |||||||||| |||||||    
T  28702641 ttggataaacaacttaattaagcacttatagcataagtgcgtaccatacaagtattttttatgtataagctatttctataacaaaagataaaa 28702733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 270 - 319
Target Start/End: Original strand, 27389295 - 27389344
Alignment:
Q  270 tagcataagtgcttatcacataagtgtttgtgtagaagctattcctataa 319  Q
    |||||||||||||||||| |||||||||| |||| |||||||| ||||||    
T  27389295 tagcataagtgcttatcatataagtgtttatgtataagctatttctataa 27389344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 320
Target Start/End: Complemental strand, 37497940 - 37497868
Alignment:
Q  248 aaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataac 320  Q
    |||||| |||||||||||||||||| ||||| |||||||| |||  || ||||||| ||| |||| |||||||    
T  37497940 aaacaacttaattaagcacttatagtataagcgcttatcatatatatgattgtgtacaagttatttctataac 37497868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 312
Target Start/End: Complemental strand, 1431470 - 1431424
Alignment:
Q  266 cttatagcataagtgcttatcacataagtgtttgtgtagaagctatt 312  Q
    |||||||||||||||||||||| |||||||||| |||| ||| ||||    
T  1431470 cttatagcataagtgcttatcatataagtgtttatgtataagttatt 1431424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 5499349 - 5499288
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgta 303  Q
    ||||| |||||| |||||||| ||||||| ||| |||||||||||| || ||||||| ||||    
T  5499349 ttggataaacaatttaattaaccacttatggcaaaagtgcttatcatatgagtgtttatgta 5499288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 343
Target Start/End: Complemental strand, 5628752 - 5628651
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagttgaa 341  Q
    ||||| |||| | |||||||||||| |||| || ||| |||||||| | ||| | || || | ||||||||  ||||||||||||||||||  |||||||    
T  5628752 ttggataaactacttaattaagcacatataacagaagggcttatcatacaagggcttatgcataagctatttttataacaaatgataaaatagagttgaa 5628653  T
Q  342 ct 343  Q
    ||    
T  5628652 ct 5628651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 39566361 - 39566324
Alignment:
Q  255 ttaattaagcacttatagcataagtgcttatcacataa 292  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  39566361 ttaattaagcacttataacataagtgcttatcaaataa 39566324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 337
Target Start/End: Original strand, 30133959 - 30134028
Alignment:
Q  266 cttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 337  Q
    ||||||||||||| ||||||||  ||||||||| |||| ||||||||  || |||||| |||||||| ||||    
T  30133959 cttatagcataagcgcttatca--taagtgtttatgtataagctatttttacaacaaaagataaaataaagt 30134028  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 338
Target Start/End: Complemental strand, 8349837 - 8349754
Alignment:
Q  255 ttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagtt 338  Q
    |||||||||| ||||||||||||   ||||||| ||||||||||||||| || ||||| || ||||||| |||||||| |||||    
T  8349837 ttaattaagcgcttatagcataaccacttatcatataagtgtttgtgtataaactatttctctaacaaaagataaaataaagtt 8349754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 332
Target Start/End: Complemental strand, 10452540 - 10452456
Alignment:
Q  248 aaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 332  Q
    |||||| |||||||||| |||||||||||||||  ||||| || |||| || |||| |||||||| ||||||||||  |||||||    
T  10452540 aaacaacttaattaagctcttatagcataagtggctatcatatcagtgcttatgtataagctatttctataacaaaatataaaat 10452456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 377 - 428
Target Start/End: Complemental strand, 32578022 - 32577971
Alignment:
Q  377 tatggaaataagctaaaaatagctcaaggatatgtcataagttattttcata 428  Q
    |||||||||||||| |||| |||||||||| |||||||||||| ||||||||    
T  32578022 tatggaaataagctgaaaacagctcaaggacatgtcataagttgttttcata 32577971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 260 - 337
Target Start/End: Original strand, 2514604 - 2514681
Alignment:
Q  260 taagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 337  Q
    ||||| |||||||||||| |||||||||  |||||| || |||| |||||||| |||||| ||| |||||||| ||||    
T  2514604 taagctcttatagcataaatgcttatcatgtaagtgcttatgtataagctatttctataataaaagataaaataaagt 2514681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 248 - 337
Target Start/End: Original strand, 32975868 - 32975957
Alignment:
Q  248 aaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 337  Q
    |||||| ||||||||||  |||||||||||| |||| ||| |||||||||| |||| ||| |||| || |||||||  ||||||| ||||    
T  32975868 aaacaacttaattaagcgtttatagcataagcgcttctcatataagtgtttatgtataagttatttctgtaacaaaatataaaataaagt 32975957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 332
Target Start/End: Complemental strand, 2023815 - 2023725
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 332  Q
    ||||| |||||| |||||||||||||||||| ||| |  ||||||| |||||||||  | || ||| |||| ||||| |||| ||||||||    
T  2023815 ttggataaacaacttaattaagcacttatagtataggcacttatcatataagtgttcatatataagttatttctatagcaaaagataaaat 2023725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 4247270 - 4247217
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtg 295  Q
    ||||| |||||| |||||||||  |||||||||||||| ||||||| |||||||    
T  4247270 ttggataaacaacttaattaagtgcttatagcataagtacttatcatataagtg 4247217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 323
Target Start/End: Complemental strand, 28130111 - 28130030
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaa 323  Q
    ||||||||||||  ||||||||  ||||||||||||| |  ||||| ||||||  ||||||  |||||||| ||||||||||    
T  28130111 ttggacaaacaatataattaagtgcttatagcataagcgtctatcatataagtacttgtgtttaagctatttctataacaaa 28130030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 30865358 - 30865411
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtg 295  Q
    ||||| |||||| ||||||||||| ||||| ||||||| | |||||||||||||    
T  30865358 ttggataaacaacttaattaagcatttataacataagttcctatcacataagtg 30865411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 332
Target Start/End: Complemental strand, 33068722 - 33068657
Alignment:
Q  267 ttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 332  Q
    |||||||||||| |||||||| |||| || || |||| ||| |||| |||||||||| ||||||||    
T  33068722 ttatagcataagcgcttatcaaataaatgcttatgtataagttatttctataacaaaagataaaat 33068657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 347
Target Start/End: Original strand, 7354105 - 7354193
Alignment:
Q  259 ttaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagttgaactattt 347  Q
    |||||| |||||||||||| ||||| ||| | |||| ||  |||| || ||||| |||||||||| |||||||| || | |||||||||    
T  7354105 ttaagcgcttatagcataaatgcttttcatacaagttttcatgtataaactatttctataacaaaagataaaataaaatcgaactattt 7354193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 21919971 - 21920011
Alignment:
Q  255 ttaattaagcacttatagcataagtgcttatcacataagtg 295  Q
    |||||||||| |||||||||||||| ||||||| |||||||    
T  21919971 ttaattaagcgcttatagcataagtacttatcatataagtg 21920011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 255 - 337
Target Start/End: Complemental strand, 38239724 - 38239642
Alignment:
Q  255 ttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 337  Q
    |||||||||||||| |||||||||  || ||||  ||||||||| |||| |||||||| |||||||||| |||||||| ||||    
T  38239724 ttaattaagcacttgtagcataagcactcatcatgtaagtgtttatgtataagctatttctataacaaaagataaaatcaagt 38239642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 328
Target Start/End: Complemental strand, 11393552 - 11393466
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgata 328  Q
    ||||| |||||  |||||||||||||||||||| ||||| |||||| ||||||| || | || |||||||| ||||| |||| ||||    
T  11393552 ttggataaacagcttaattaagcacttatagcacaagtgtttatcatataagtgcttatctataagctatttctatatcaaaagata 11393466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 328
Target Start/End: Complemental strand, 11410213 - 11410127
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgata 328  Q
    ||||| |||||  |||||||||||||||||||| ||||| |||||| ||||||| || | || |||||||| ||||| |||| ||||    
T  11410213 ttggataaacagcttaattaagcacttatagcacaagtgtttatcatataagtgcttatctataagctatttctatatcaaaagata 11410127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 337
Target Start/End: Original strand, 35459807 - 35459889
Alignment:
Q  255 ttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 337  Q
    |||||| ||| ||||||||||||||| |||||| ||||||| || |||| ||||||||  |||| |||| |||||||| ||||    
T  35459807 ttaattcagctcttatagcataagtgtttatcatataagtgattttgtataagctatttgtataccaaaagataaaataaagt 35459889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 256 - 337
Target Start/End: Original strand, 25609695 - 25609775
Alignment:
Q  256 taattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 337  Q
    ||||||||||||| |||||||||  |||| |||||||||| || |||| |||||||| |||||| ||| |||||||| ||||    
T  25609695 taattaagcacttctagcataagctctta-cacataagtgcttatgtataagctatttctataagaaaagataaaataaagt 25609775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 248 - 337
Target Start/End: Original strand, 31461328 - 31461417
Alignment:
Q  248 aaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 337  Q
    |||||| |||||||||||||| ||||||||  |  ||||| ||||||| || | || |||||||| |||||||||| |||||||| ||||    
T  31461328 aaacaacttaattaagcacttctagcataaacgtatatcatataagtggttatatataagctatttctataacaaaagataaaataaagt 31461417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 428
Target Start/End: Original strand, 10285890 - 10285945
Alignment:
Q  373 aacttatggaaataagctaaaaatagctcaaggatatgtcataagttattttcata 428  Q
    |||||||||||||||| | |||| |||| | ||| |||||||||||||||||||||    
T  10285890 aacttatggaaataagttgaaaacagcttatggacatgtcataagttattttcata 10285945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 285
Target Start/End: Complemental strand, 14317005 - 14316962
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttat 285  Q
    ||||| |||||| |||||||||| ||||||||||||||||||||    
T  14317005 ttggataaacaaattaattaagcgcttatagcataagtgcttat 14316962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 337
Target Start/End: Complemental strand, 10198657 - 10198569
Alignment:
Q  249 aacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 337  Q
    ||||| ||||||| |  |||||||||| ||||||||||| ||||||  || |||| ||||||||| |||||  || |||||||| ||||    
T  10198657 aacaacttaattaggtgcttatagcatgagtgcttatcatataagtacttttgtataagctattcatataagtaaagataaaataaagt 10198569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 295
Target Start/End: Complemental strand, 43456858 - 43456818
Alignment:
Q  255 ttaattaagcacttatagcataagtgcttatcacataagtg 295  Q
    ||||||||||||||||||||||||   ||||||||||||||    
T  43456858 ttaattaagcacttatagcataagcatttatcacataagtg 43456818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 242 - 347
Target Start/End: Complemental strand, 7749268 - 7749163
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagttgaa 341  Q
    ||||| |||||| |||| ||||| ||||||||||||||| ||| || |||||||||| |||| | |||||| |||||| ||| || ||||| || | |||    
T  7749268 ttggataaacaacttaactaagctcttatagcataagtgtttaccatataagtgtttatgtatacgctatttctataataaaagagaaaataaaatcgaa 7749169  T
Q  342 ctattt 347  Q
    ||||||    
T  7749168 ctattt 7749163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 255 - 332
Target Start/End: Original strand, 485978 - 486055
Alignment:
Q  255 ttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 332  Q
    |||||||||| ||||||||||||| |||||||| | ||||| || |||| | |||||| ||| |||||| ||||||||    
T  485978 ttaattaagcgcttatagcataagcgcttatcataaaagtgcttatgtatatgctatttctaaaacaaaagataaaat 486055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 347
Target Start/End: Original strand, 47970228 - 47970307
Alignment:
Q  268 tatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagttgaactattt 347  Q
    |||||| ||||  ||| ||| ||||||| || |||| |||||||| |||||||||| |||||||||||||  ||||||||    
T  47970228 tatagcgtaaggacttgtcatataagtgcttatgtataagctatttctataacaaaagataaaatgaagtcaaactattt 47970307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 337
Target Start/End: Complemental strand, 51556053 - 51555958
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaatgaagt 337  Q
    |||| ||||||| ||||| ||||||||||| |||||    |||||| ||||||| || |||| ||||||||  ||||||||| |||||||| ||||    
T  51556053 ttggccaaacaacttaataaagcacttataacataaccatttatcatataagtgcttatgtataagctattattataacaaaagataaaataaagt 51555958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 323
Target Start/End: Complemental strand, 41241730 - 41241649
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaa 323  Q
    ||||||||||||  ||||||||  ||||||||||||| |  ||||| ||||||  ||||||  |||||||| ||||||||||    
T  41241730 ttggacaaacaatataattaagtgcttatagcataagcgtctatcatataagtacttgtgtttaagctatttctataacaaa 41241649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 332
Target Start/End: Original strand, 46796915 - 46796992
Alignment:
Q  255 ttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaatgataaaat 332  Q
    |||||||| |||||||| ||||||||||||||| ||||||  || || | ||||||||   |||||||| ||||||||    
T  46796915 ttaattaatcacttataacataagtgcttatcatataagttcttatgcataagctattttcataacaaacgataaaat 46796992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 24193469 - 24193521
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagt 294  Q
    ||||| |||||| |||||| ||||||||||||||||  |||||||| ||||||    
T  24193469 ttggataaacaacttaattgagcacttatagcataaacgcttatcatataagt 24193521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 34098 - 34023
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctat 317  Q
    ||||| |||||| |||||||||  |||||||||||||  || |||| ||||||| || ||||||||||||| ||||    
T  34098 ttggataaacaacttaattaagagcttatagcataagatctgatcatataagtgattatgtagaagctatttctat 34023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 323
Target Start/End: Complemental strand, 8698 - 8617
Alignment:
Q  242 ttggacaaacaagttaattaagcacttatagcataagtgcttatcacataagtgtttgtgtagaagctattcctataacaaa 323  Q
    ||||||||||||  ||||||||  ||||||||||||| |  ||||| ||||||  ||||||  |||||||| ||||||||||    
T  8698 ttggacaaacaatataattaagtgcttatagcataagcgtctatcatataagtacttgtgtttaagctatttctataacaaa 8617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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