View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0753_low_8 (Length: 458)
Name: NF0753_low_8
Description: NF0753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0753_low_8 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 196 - 443
Target Start/End: Complemental strand, 6861 - 6618
Alignment:
| Q |
196 |
caattgaacatagacttttgttgtcatatgcctagagcaccacttctttgatctcctcttccataaatagtcttgatatgatgacattcttttcttccga |
295 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6861 |
caattgaacatagacttttgttgtcatacgcctagagcaccacttctttgatctcctcttccata----gtcttgatatgatgacattcttttcttccga |
6766 |
T |
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| Q |
296 |
taaagaagggaaagcagctccatctagctcgggtcgtctccacttcttcaaaatgaccactaaaaaccctacttacacttaactaatctattatagcaat |
395 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6765 |
taaagaagggaaagcagctccatctagctcgagtcgtctccacttcttcaaaatgaccactaaaaaccctacttacacttaactaatctattatagcaat |
6666 |
T |
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| Q |
396 |
ttgatccacaagaacttttactctatcctccatattcccgtgttcatc |
443 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6665 |
ttgatccacaagaacttttactctatcctccatattcccgtgttcatc |
6618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 196 - 443
Target Start/End: Original strand, 23385607 - 23385850
Alignment:
| Q |
196 |
caattgaacatagacttttgttgtcatatgcctagagcaccacttctttgatctcctcttccataaatagtcttgatatgatgacattcttttcttccga |
295 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23385607 |
caattgaacatagacttttgttgtcatacgcctagagcaccacttctttgatctcctcttccata----gtcttgatatgatgacattcttttcttccga |
23385702 |
T |
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| Q |
296 |
taaagaagggaaagcagctccatctagctcgggtcgtctccacttcttcaaaatgaccactaaaaaccctacttacacttaactaatctattatagcaat |
395 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23385703 |
taaagaagggaaagcagctccatctagctcgagtcgtctccacttcttcaaaatgaccactaaaaaccctacttacacttaactaatctattatagcaat |
23385802 |
T |
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| Q |
396 |
ttgatccacaagaacttttactctatcctccatattcccgtgttcatc |
443 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23385803 |
ttgatccacaagaacttttactctatcctccatattcccgtgttcatc |
23385850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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