View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0753_low_9 (Length: 452)
Name: NF0753_low_9
Description: NF0753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0753_low_9 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 46223663 - 46223221
Alignment:
| Q |
1 |
cataaaagagcctgctctttatcatccaatagcaacaactcaactaatggatcaacaagttcgagtagtttcccattacgcgcacaatgtctagcccaag |
100 |
Q |
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| T |
46223663 |
cataaaagagcctgctctttatcatccaatagcaacaactcaactaatggatcaacaagttcgagtagtttcccattacgcgcacaatgtctagcccaag |
46223564 |
T |
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| Q |
101 |
aaaccaaatttgctcgcttaaactccgaaatatgcttgaatccatccccacc------accaccggcattcacttgaagaggtcttctcccagaaacaat |
194 |
Q |
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| T |
46223563 |
aaaccaaattcgctcgcttaaactctgaaatatgcttgaatccatccccatccccactaccaccggcattcacttgaagaggtcttctcccagaaacaat |
46223464 |
T |
|
| Q |
195 |
aacaagtaataacacaccaaaactataaacatcagacttctctgttacatcactataaccattttcaggagcaacataaaaaacagttcctctcatactt |
294 |
Q |
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| T |
46223463 |
aacaagtaataacacaccaaaactataaacatcagacttctctgttacatcactataaccattttcaggagcaacataaaaaacagttcctctcatactt |
46223364 |
T |
|
| Q |
295 |
ggagtactactaatttcaccactcttatgaatttctccactattacatgaatcataactattccaactcactctccttaattccccacttaaccatgaat |
394 |
Q |
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| T |
46223363 |
ggagtactactaatttcaccactcttatgaatttctccactattacatgaatcataactattccaactcactctccttaattccccacttaaccatgaat |
46223264 |
T |
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| Q |
395 |
caccactacctcgttccttcctactacggtttttataactcat |
437 |
Q |
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| T |
46223263 |
caccactacctcgttccttcctactacggtttttataactcat |
46223221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 226599 - 226673
Alignment:
| Q |
262 |
ggagcaacataaaaaacagttcctctcatacttggagtactactaatttcaccactcttatgaatttctccacta |
336 |
Q |
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| T |
226599 |
ggagcaacataacaaacggttcctctcatacttggtgtactactcacaccaccactctttggaatatctccacta |
226673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 320
Target Start/End: Original strand, 12952763 - 12952825
Alignment:
| Q |
258 |
ttcaggagcaacataaaaaacagttcctctcatacttggagtactactaatttcaccactctt |
320 |
Q |
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| T |
12952763 |
ttcaggagcaatgtaacaaacagttcctctcatactcggtgtgctacttattccaccactctt |
12952825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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