View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0754_high_2 (Length: 543)

Name: NF0754_high_2
Description: NF0754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0754_high_2
NF0754_high_2
[»] chr1 (8 HSPs)
chr1 (194-305)||(1063512-1063623)
chr1 (427-534)||(1063283-1063390)
chr1 (106-150)||(1063668-1063712)
chr1 (224-288)||(39508962-39509026)
chr1 (51-93)||(1063731-1063773)
chr1 (224-288)||(1688040-1688104)
chr1 (224-288)||(33991736-33991800)
chr1 (224-288)||(45565323-45565387)
[»] chr7 (3 HSPs)
chr7 (214-301)||(22394333-22394419)
chr7 (224-288)||(7666987-7667051)
chr7 (224-288)||(34651876-34651940)
[»] chr6 (1 HSPs)
chr6 (217-288)||(24735076-24735147)
[»] chr5 (4 HSPs)
chr5 (218-288)||(25027116-25027186)
chr5 (224-288)||(35701597-35701661)
chr5 (426-490)||(37508432-37508496)
chr5 (224-288)||(38120018-38120082)
[»] chr3 (4 HSPs)
chr3 (224-288)||(30121345-30121409)
chr3 (224-288)||(44411977-44412041)
chr3 (224-288)||(47789269-47789333)
chr3 (224-288)||(49861030-49861094)
[»] chr4 (3 HSPs)
chr4 (217-288)||(17622289-17622360)
chr4 (219-256)||(16535563-16535600)
chr4 (224-288)||(20534122-20534185)
[»] scaffold0028 (1 HSPs)
scaffold0028 (224-288)||(35278-35342)
[»] chr8 (1 HSPs)
chr8 (227-291)||(3404399-3404463)
[»] chr2 (1 HSPs)
chr2 (224-256)||(10165292-10165324)


Alignment Details
Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 194 - 305
Target Start/End: Complemental strand, 1063623 - 1063512
Alignment:
Q  194 gtgatatagatatagatatattttaaggtattgtttgggagtttagaggggagaggaagggagtggtttgagggttgggaaatatatagaaaaatagaga 293  Q
    ||||||||||||||||||| || |||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1063623 gtgatatagatatagatattttgtaaggtattgtttgtgagtttggaggggagaggaagggagtggtttgaggattgggaaatatatagaaaaatagaga 1063524  T
Q  294 aacctttctaac 305  Q
    ||||||||||||    
T  1063523 aacctttctaac 1063512  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 427 - 534
Target Start/End: Complemental strand, 1063390 - 1063283
Alignment:
Q  427 ccccaatataatttgttagttcttccatatgagaggaattttgtatcgtgaataaaaaattaactcccaaaaccatcgcctaatgtcttatatttcttac 526  Q
    |||||||| ||||| |||||||||||||||||||| | |||||||| |||||||||||||||||||| |||||| || ||||||||||||||||||||||    
T  1063390 ccccaatacaattttttagttcttccatatgagagaagttttgtattgtgaataaaaaattaactcctaaaaccctctcctaatgtcttatatttcttac 1063291  T
Q  527 accggctc 534  Q
    ||||||||    
T  1063290 accggctc 1063283  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 1063712 - 1063668
Alignment:
Q  106 taattaagcctaaactttaatgtgattatttttattgaaactaag 150  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  1063712 taattaagcctaaactttaatgtgattatttttattaaaactaag 1063668  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 39509026 - 39508962
Alignment:
Q  224 ttgtttgggagtttagaggggagaggaagggagtggtttgagggttgggaaatatatagaaaaat 288  Q
    |||||||||||||| |||||||| ||||||||| | ||||  |  ||||||||||||||||||||    
T  39509026 ttgtttgggagtttggaggggaggggaagggagagctttggcgagtgggaaatatatagaaaaat 39508962  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 1063773 - 1063731
Alignment:
Q  51 tgattttaaaatgaggtaaccaattcgtgagttagtgaaaata 93  Q
    |||||| |||| |||| ||||||||||||||||||||||||||    
T  1063773 tgatttaaaaacgagggaaccaattcgtgagttagtgaaaata 1063731  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 1688040 - 1688104
Alignment:
Q  224 ttgtttgggagtttagaggggagaggaagggagtggtttgagggttgggaaatatatagaaaaat 288  Q
    |||||||||||||| |||||||  ||| ||||| | |||| ||| | ||||||||||||||||||    
T  1688040 ttgtttgggagtttggaggggaagggaggggagggctttggggggttggaaatatatagaaaaat 1688104  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 33991800 - 33991736
Alignment:
Q  224 ttgtttgggagtttagaggggagaggaagggagtggtttgagggttgggaaatatatagaaaaat 288  Q
    |||||||||||||| |||||||  ||| ||||| | |||| ||| | ||||||||||||||||||    
T  33991800 ttgtttgggagtttggaggggaagggaggggagggctttggggggttggaaatatatagaaaaat 33991736  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 45565387 - 45565323
Alignment:
Q  224 ttgtttgggagtttagaggggagaggaagggagtggtttgagggttgggaaatatatagaaaaat 288  Q
    ||||||| |||||| |||||||  ||| ||||| | |||||||| | ||||||||||||||||||    
T  45565387 ttgtttgcgagtttggaggggaagggaggggagggttttgaggggttggaaatatatagaaaaat 45565323  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 214 - 301
Target Start/End: Complemental strand, 22394419 - 22394333
Alignment:
Q  214 ttttaaggtattgtttgggagtttagaggggagaggaagggagtggtttgagggttgggaaatatatagaaaaatagagaaacctttc 301  Q
    |||| |||| ||||||||||||||||||| ||||||| ||||| | |||||||| ||| ||||||| ||||||||  ||||| |||||    
T  22394419 tttttaggttttgtttgggagtttagaggagagaggatgggagagttttgaggggtggaaaatata-agaaaaatgaagaaatctttc 22394333  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 7666987 - 7667051
Alignment:
Q  224 ttgtttgggagtttagaggggagaggaagggagtggtttgagggttgggaaatatatagaaaaat 288  Q
    |||||||||||||| |||||||  ||| ||||| | |||| ||| | ||||||||||||||||||    
T  7666987 ttgtttgggagtttggaggggaagggaggggagggctttggggggttggaaatatatagaaaaat 7667051  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 34651876 - 34651940
Alignment:
Q  224 ttgtttgggagtttagaggggagaggaagggagtggtttgagggttgggaaatatatagaaaaat 288  Q
    |||||||||||||| |||||||  ||| ||||  | |||||||| | ||||||||||||||||||    
T  34651876 ttgtttgggagtttggaggggaagggaggggatggctttgaggggttggaaatatatagaaaaat 34651940  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 24735147 - 24735076
Alignment:
Q  217 taaggtattgtttgggagtttagaggggagaggaagggagtggtttgagggttgggaaatatatagaaaaat 288  Q
    |||||| |||||||||||||| |||||||| ||| ||||| | |||| ||| | ||||||||||||||||||    
T  24735147 taaggttttgtttgggagtttggaggggaggggaggggagggttttggggggttggaaatatatagaaaaat 24735076  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 288
Target Start/End: Complemental strand, 25027186 - 25027116
Alignment:
Q  218 aaggtattgtttgggagtttagaggggagaggaagggagtggtttgagggttgggaaatatatagaaaaat 288  Q
    ||||| |||||||||||||| |||||||  ||| ||||| | |||||||| | ||||||||||||||||||    
T  25027186 aaggttttgtttgggagtttggaggggaagggaggggagggctttgaggggttggaaatatatagaaaaat 25027116  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 35701661 - 35701597
Alignment:
Q  224 ttgtttgggagtttagaggggagaggaagggagtggtttgagggttgggaaatatatagaaaaat 288  Q
    |||||||||||||| |||||||  ||| ||||| | || ||||| | ||||||||||||||||||    
T  35701661 ttgtttgggagtttggaggggacgggaggggagggcttcgaggggttggaaatatatagaaaaat 35701597  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 490
Target Start/End: Original strand, 37508432 - 37508496
Alignment:
Q  426 cccccaatataatttgttagttcttccatatgagaggaattttgtatcgtgaataaaaaattaac 490  Q
    ||||||||| ||||| | ||||| |||| ||||| |||||||| |||  ||||||||||||||||    
T  37508432 cccccaatacaatttttgagttcctccaaatgaggggaattttttattatgaataaaaaattaac 37508496  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 38120018 - 38120082
Alignment:
Q  224 ttgtttgggagtttagaggggagaggaagggagtggtttgagggttgggaaatatatagaaaaat 288  Q
    |||||||||||||| |||||||  ||| ||||| | |||| ||| | ||||||||||||||||||    
T  38120018 ttgtttgggagtttggaggggaagggaggggagagctttggggggttggaaatatatagaaaaat 38120082  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 30121345 - 30121409
Alignment:
Q  224 ttgtttgggagtttagaggggagaggaagggagtggtttgagggttgggaaatatatagaaaaat 288  Q
    |||||||||||||| |||||||| ||| ||||| | |||| ||| | ||||||||||||||||||    
T  30121345 ttgtttgggagtttggaggggaggggaggggagggctttggggggttggaaatatatagaaaaat 30121409  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 44411977 - 44412041
Alignment:
Q  224 ttgtttgggagtttagaggggagaggaagggagtggtttgagggttgggaaatatatagaaaaat 288  Q
    |||||||||||||| |||||||  ||| ||||| | |||| ||| | ||||||||||||||||||    
T  44411977 ttgtttgggagtttggaggggaagggaggggagggctttggggggttggaaatatatagaaaaat 44412041  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 47789269 - 47789333
Alignment:
Q  224 ttgtttgggagtttagaggggagaggaagggagtggtttgagggttgggaaatatatagaaaaat 288  Q
    |||||||||||||| |||||||  ||| ||||| | |||| ||| | ||||||||||||||||||    
T  47789269 ttgtttgggagtttggaggggaagggaggggagggctttggggggttggaaatatatagaaaaat 47789333  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 49861094 - 49861030
Alignment:
Q  224 ttgtttgggagtttagaggggagaggaagggagtggtttgagggttgggaaatatatagaaaaat 288  Q
    |||||||||||||| |||||||  ||| ||||| | |||| ||| | ||||||||||||||||||    
T  49861094 ttgtttgggagtttggaggggaagggaggggagggctttggggggttggaaatatatagaaaaat 49861030  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 17622289 - 17622360
Alignment:
Q  217 taaggtattgtttgggagtttagaggggagaggaagggagtggtttgagggttgggaaatatatagaaaaat 288  Q
    |||||| |||||||||||||| |||||||  ||| ||||| | |||| ||| | ||||||||||||||||||    
T  17622289 taaggttttgtttgggagtttggaggggaagggaggggagggctttggggggttggaaatatatagaaaaat 17622360  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 256
Target Start/End: Original strand, 16535563 - 16535600
Alignment:
Q  219 aggtattgtttgggagtttagaggggagaggaagggag 256  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  16535563 aggttttgtttgggagtttagaggggagaggaggggag 16535600  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 20534185 - 20534122
Alignment:
Q  224 ttgtttgggagtttagaggggagaggaagggagtggtttgagggttgggaaatatatagaaaaat 288  Q
    |||||||||||||| |||||||  ||| ||||| | |||| ||||| ||||||||||||||||||    
T  20534185 ttgtttgggagtttggaggggaagggaggggagggctttgggggtt-ggaaatatatagaaaaat 20534122  T

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Target: scaffold0028 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 35278 - 35342
Alignment:
Q  224 ttgtttgggagtttagaggggagaggaagggagtggtttgagggttgggaaatatatagaaaaat 288  Q
    |||||||||||||| |||||||  ||| ||||| | |||| ||| | ||||||||||||||||||    
T  35278 ttgtttgggagtttggaggggaagggaggggagggctttggggggttggaaatatatagaaaaat 35342  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 3404399 - 3404463
Alignment:
Q  227 tttgggagtttagaggggagaggaagggagtggtttgagggttgggaaatatatagaaaaataga 291  Q
    ||||||||||| |||||||  ||| |||||   |||||||| | |||||||||||||||||||||    
T  3404399 tttgggagtttggaggggaagggaggggaggactttgaggggttggaaatatatagaaaaataga 3404463  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 10165292 - 10165324
Alignment:
Q  224 ttgtttgggagtttagaggggagaggaagggag 256  Q
    |||||||||||||| ||||||||||||||||||    
T  10165292 ttgtttgggagtttggaggggagaggaagggag 10165324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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