View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0754_high_9 (Length: 329)
Name: NF0754_high_9
Description: NF0754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0754_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 140 - 301
Target Start/End: Complemental strand, 22107867 - 22107704
Alignment:
| Q |
140 |
aagctgcataccataatgtaacttccacaaacgagcagcactgccgacgtactattcaaggggccaagaagaggcagtatatctatcaatag--tgctta |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||| |
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| T |
22107867 |
aagctgcataccataatgtaacttccacaaacgagcagcactgccgacgtactattcgagaggccaagaagaggcagtatatctatcaatagactgctta |
22107768 |
T |
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| Q |
238 |
cgttttgatcatgtaatgtcctgaaggctttaactgaacccgaagaaagattaccgcgaaatat |
301 |
Q |
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| T |
22107767 |
cgttttgatcatgtaatgtcctgaaggctttaactgaacccgcagaaagattaccgagaaatat |
22107704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 22137672 - 22137528
Alignment:
| Q |
1 |
ccaaattccatatgccatattattgttatatatacatcaccagataatttatcacaactgtacagaacctttacttgaaaacatgaaattaatcaatatt |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22137672 |
ccaaattccatatgccatattattgttatttatacatcaccagataatttatcataactgtacagaacctttacttgaaaacatgaaattaatcaatatt |
22137573 |
T |
|
| Q |
101 |
gttatcatattacagaaagataaaacagatacgaagaataagctg |
145 |
Q |
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| T |
22137572 |
gttatcatattacagaaagataaaacagatacgaagaataagctg |
22137528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 140 - 301
Target Start/End: Complemental strand, 40549627 - 40549464
Alignment:
| Q |
140 |
aagctgcataccataatgtaacttccacaaacgagcagcactgccgacgtactattcaaggggccaagaagaggcagtatatctatcaatag--tgctta |
237 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||| |
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| T |
40549627 |
aagctgcataccataatgtaacttccacaaacgagcagcactgccgacgtactattcgagaggccaagaagaggcagtatatctatcaatagactgctta |
40549528 |
T |
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| Q |
238 |
cgttttgatcatgtaatgtcctgaaggctttaactgaacccgaagaaagattaccgcgaaatat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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|
| T |
40549527 |
cgttttgatcatgtaatgtcctgaaggctttaactgaacccgcagaaagattaccgagaaatat |
40549464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 40552699 - 40552555
Alignment:
| Q |
1 |
ccaaattccatatgccatattattgttatatatacatcaccagataatttatcacaactgtacagaacctttacttgaaaacatgaaattaatcaatatt |
100 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40552699 |
ccaaattccatatgccatattattgttatttatacatcaccagataatttatcataactgtacagaacctttacttgaaaacatgaaattaatcaatatt |
40552600 |
T |
|
| Q |
101 |
gttatcatattacagaaagataaaacagatacgaagaataagctg |
145 |
Q |
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| T |
40552599 |
gttatcatattacagaaagataaaacagatacgaagaataagctg |
40552555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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