View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0754_low_1 (Length: 753)

Name: NF0754_low_1
Description: NF0754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0754_low_1
NF0754_low_1
[»] chr2 (6 HSPs)
chr2 (1-593)||(5823120-5823714)
chr2 (16-220)||(5766102-5766306)
chr2 (1-220)||(5831886-5832105)
chr2 (463-594)||(5765461-5765592)
chr2 (88-203)||(5827215-5827330)
chr2 (463-593)||(5832238-5832368)
[»] chr6 (9 HSPs)
chr6 (70-252)||(29329483-29329665)
chr6 (481-560)||(29329780-29329859)
chr6 (113-200)||(33784635-33784722)
chr6 (152-213)||(2451135-2451196)
chr6 (121-206)||(3431180-3431265)
chr6 (85-200)||(2449076-2449191)
chr6 (166-200)||(2571690-2571724)
chr6 (166-200)||(2598443-2598477)
chr6 (120-209)||(33788369-33788458)
[»] chr4 (6 HSPs)
chr4 (121-212)||(29936972-29937063)
chr4 (121-206)||(51145993-51146078)
chr4 (121-206)||(51157115-51157200)
chr4 (121-212)||(51213085-51213176)
chr4 (355-390)||(22402397-22402432)
chr4 (103-221)||(51199914-51200032)
[»] chr1 (3 HSPs)
chr1 (102-221)||(38525277-38525396)
chr1 (106-200)||(27810421-27810515)
chr1 (120-209)||(38566432-38566521)
[»] chr3 (2 HSPs)
chr3 (102-212)||(49734082-49734192)
chr3 (121-214)||(49736871-49736964)
[»] chr7 (1 HSPs)
chr7 (115-212)||(41176819-41176916)
[»] chr8 (1 HSPs)
chr8 (157-203)||(7861794-7861840)


Alignment Details
Target: chr2 (Bit Score: 538; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 1 - 593
Target Start/End: Complemental strand, 5823714 - 5823120
Alignment:
Q  1 actgctatggtgtcggcatttctaatagttgttaaacggtgtgcaacaactacggtagtcctttgtgtcataactttttccaatgcttcttgaacaacac 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823714 actgctatggtgtcagcatttctaatagttgttaaacggtgtgcaacaactacggtagtcctttgtgtcataactttttccaatgcttcttgaacaacac 5823615  T
Q  101 gttcagactcagcatccaatgcacttgttgcttcatcaagaagaaggattcttggattcttcaatatggcccttgcaattgcaattctttgcttttgtcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823614 gttcagactcagcatccaatgcacttgttgcttcatcaagaagaaggattcttggattcttcaatatggcccttgcaattgcaattctttgcttttgtcc 5823515  T
Q  201 accagaaagttgagtcccatgacctcctaccattgaatcaagaccctgcaaacagaaatgtacaattcattagattcaaacaa-tctgagccatgttgca 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||    
T  5823514 accagaaagttgagtcccatgacctcctaccattgaatcaagaccctgcaaacataaatgtacaattcattagattcaaaaaattctgagccatgttgca 5823415  T
Q  300 tcgacacttcatattgaatgtttg-tctggtattcgacaccaacatgatactgttgcatgtgcttacattcaatcacttctattttctcaatgtcaagct 398  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823414 tcgacacttcatattgaatgtttgttctggtattcgacaccaacatgatactgttgcatgtgcttacattcaatcacttctattttctcaatgtcaagct 5823315  T
Q  399 tggtgtaagtgcttcaccggataatagtgtctacaagtatatcccgagtnnnnnnntttgttatacctgagggagtttatcaatgaattttttagcatta 498  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  5823314 tggtgtaagtgcttcaccggataatagtgtctacaagtatatcctgagtaaaagaatttgttatacctgagggagtttatcaatgaattttttagcatta 5823215  T
Q  499 gcaagtgttattgctgttgctatttcctcgtctgttgcaccttctttcccataagcaatgttatccttgatactagcagtaaacaacacaggttc 593  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823214 gcaagtgttattgctgttgctatttcctcatctgttgcaccttctttcccataagcaatgttatccttgatactagcagtaaacaacacaggttc 5823120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 5766306 - 5766102
Alignment:
Q  16 gcatttctaatagttgttaaacggtgtgcaacaactacggtagtcctttgtgtcataactttttccaatgcttcttgaacaacacgttcagactcagcat 115  Q
    |||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5766306 gcatttcttatagttgttaaacgatgtgcaacaactacggtagttctttgtgtcataactttttccaatgcttcttgaacaacacgttcagactcagcat 5766207  T
Q  116 ccaatgcacttgttgcttcatcaagaagaaggattcttggattcttcaatatggcccttgcaattgcaattctttgcttttgtccaccagaaagttgagt 215  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  5766206 ccaatgcacttgttgcttcatcgagaagaaggattcttgggttcttcaatattgccctagcaattgcaattctttgcttttgtccaccagaaagttgagt 5766107  T
Q  216 cccat 220  Q
    |||||    
T  5766106 cccat 5766102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 5831886 - 5832105
Alignment:
Q  1 actgctatggtgtcggcatttctaatagttgttaaacggtgtgcaacaactacggtagtcctttgtgtcataactttttccaatgcttcttgaacaacac 100  Q
    ||||||||  |||| |||||||| |||||||| ||||| || ||||| || || ||||||||||     |||| |||||| | |||||||||||||| ||    
T  5831886 actgctattatgtcagcatttctgatagttgtcaaacgatgcgcaacgacaacagtagtccttttcaatataattttttctagtgcttcttgaacaatac 5831985  T
Q  101 gttcagactcagcatccaatgcacttgttgcttcatcaagaagaaggattcttggattcttcaatatggcccttgcaattgcaattctttgcttttgtcc 200  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  5831986 gttcagactccgcatccaatgcacttgttgcttcatcaagaagaaggatttttgggttcttcaatattgcccttgcaattgcaattctttgcttttgtcc 5832085  T
Q  201 accagaaagttgagtcccat 220  Q
    ||||||||||||||||||||    
T  5832086 accagaaagttgagtcccat 5832105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 463 - 594
Target Start/End: Complemental strand, 5765592 - 5765461
Alignment:
Q  463 acctgagggagtttatcaatgaattttttagcattagcaagtgttattgctgttgctatttcctcgtctgttgcaccttctttcccataagcaatgttat 562  Q
    |||||||| ||||| |||||||| || || ||||| ||||||||||| ||||||| ||| || || || |||||||||||||||||||| || ||||| |    
T  5765592 acctgaggaagtttgtcaatgaaattcttggcatttgcaagtgttatagctgttgttatctcttcatcagttgcaccttctttcccatatgctatgttct 5765493  T
Q  563 ccttgatactagcagtaaacaacacaggttct 594  Q
    |  ||||| |||  |||||||| | |||||||    
T  5765492 ctctgatagtagtggtaaacaagataggttct 5765461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 5827330 - 5827215
Alignment:
Q  88 tcttgaacaacacgttcagactcagcatccaatgcacttgttgcttcatcaagaagaaggattcttggattcttcaatatggcccttgcaattgcaattc 187  Q
    |||||||| |||||||| ||||||||||| | |||||| ||||| |||||||| | ||| ||||| || || |||||||| || ||||||||||| || |    
T  5827330 tcttgaactacacgttctgactcagcatcgagtgcactggttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatac 5827231  T
Q  188 tttgcttttgtccacc 203  Q
     ||| |||||||||||    
T  5827230 gttgtttttgtccacc 5827215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 463 - 593
Target Start/End: Original strand, 5832238 - 5832368
Alignment:
Q  463 acctgagggagtttatcaatgaattttttagcattagcaagtgttattgctgttgctatttcctcgtctgttgcaccttctttcccataagcaatgttat 562  Q
    |||||||| ||||| ||||||||||| || ||||| || |||||||| ||||||| ||| || || || |||||||||||||||||||| || ||||| |    
T  5832238 acctgaggaagtttgtcaatgaatttcttggcatttgctagtgttatagctgttgttatctcttcatcagttgcaccttctttcccatatgctatgttct 5832337  T
Q  563 ccttgatactagcagtaaacaacacaggttc 593  Q
    |  |||||  || ||||||||| | ||||||    
T  5832338 ctctgatagaagtagtaaacaagataggttc 5832368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 7e-51; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 70 - 252
Target Start/End: Original strand, 29329483 - 29329665
Alignment:
Q  70 ataactttttccaatgcttcttgaacaacacgttcagactcagcatccaatgcacttgttgcttcatcaagaagaaggattcttggattcttcaatatgg 169  Q
    |||| |||||| |||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||| ||| | || ||||||||||| |    
T  29329483 ataattttttctaatgcttcttgaacaatatgttcagactcagcatccaacgcacttgttgcttcatcaagaagaagaattttagggttcttcaatattg 29329582  T
Q  170 cccttgcaattgcaattctttgcttttgtccaccagaaagttgagtcccatgacctcctaccattgaatcaagaccctgcaaa 252  Q
    |||| ||||||||||||||||||||||| || |||||||||||||||||||     ||| |||||| ||||||||||||||||    
T  29329583 ccctagcaattgcaattctttgcttttgccctccagaaagttgagtcccattttgccctgccattgtatcaagaccctgcaaa 29329665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 481 - 560
Target Start/End: Original strand, 29329780 - 29329859
Alignment:
Q  481 atgaattttttagcattagcaagtgttattgctgttgctatttcctcgtctgttgcaccttctttcccataagcaatgtt 560  Q
    ||||| ||||| ||||||||||||||||||||||||| ||| ||||| || |||||||||||||||||||| || |||||    
T  29329780 atgaagtttttggcattagcaagtgttattgctgttgttatctcctcatcagttgcaccttctttcccatatgctatgtt 29329859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 200
Target Start/End: Original strand, 33784635 - 33784722
Alignment:
Q  113 catccaatgcacttgttgcttcatcaagaagaaggattcttggattcttcaatatggcccttgcaattgcaattctttgcttttgtcc 200  Q
    ||||||| ||||||||||||||||| || ||||| ||  |||||||  | | ||| |||||||||||||| |||||||||||||||||    
T  33784635 catccaaagcacttgttgcttcatctagtagaagtatgattggatttctaagtatagcccttgcaattgctattctttgcttttgtcc 33784722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 2451196 - 2451135
Alignment:
Q  152 ttggattcttcaatatggcccttgcaattgcaattctttgcttttgtccaccagaaagttga 213  Q
    |||||||||||||||| || || || |||||||| ||||||||||| |||||||||||||||    
T  2451196 ttggattcttcaatatagctctagctattgcaatcctttgcttttgaccaccagaaagttga 2451135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 206
Target Start/End: Original strand, 3431180 - 3431265
Alignment:
Q  121 gcacttgttgcttcatcaagaagaaggattcttggattcttcaatatggcccttgcaattgcaattctttgcttttgtccaccaga 206  Q
    ||||| |||||||| || |  ||||||||  ||||||| ||||| || || |||||||||||||| ||||||||||||||||||||    
T  3431180 gcactagttgcttcgtctaagagaaggatctttggatttttcaacatagctcttgcaattgcaatcctttgcttttgtccaccaga 3431265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 200
Target Start/End: Complemental strand, 2449191 - 2449076
Alignment:
Q  85 gcttcttgaacaacacgttcagactcagcatccaatgcacttgttgcttcatcaagaagaaggattcttggattcttcaatatggcccttgcaattgcaa 184  Q
    |||||||| ||||| ||||| || |||  ||| | ||||||||||||||| || || |  || ||||||||||| || | |||||| |||||||| | ||    
T  2449191 gcttcttggacaactcgttcggattcaaaatctagtgcacttgttgcttcgtctagcaatagaattcttggatttttgattatggctcttgcaatggaaa 2449092  T
Q  185 ttctttgcttttgtcc 200  Q
    | ||||||||||||||    
T  2449091 tcctttgcttttgtcc 2449076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 2571690 - 2571724
Alignment:
Q  166 atggcccttgcaattgcaattctttgcttttgtcc 200  Q
    ||||| |||||||||||||||||||||||||||||    
T  2571690 atggctcttgcaattgcaattctttgcttttgtcc 2571724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 2598443 - 2598477
Alignment:
Q  166 atggcccttgcaattgcaattctttgcttttgtcc 200  Q
    ||||| |||||||||||||||||||||||||||||    
T  2598443 atggctcttgcaattgcaattctttgcttttgtcc 2598477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 33788369 - 33788458
Alignment:
Q  120 tgcacttgttgcttcatcaagaagaaggattcttggattcttcaatatggcccttgcaattgcaattctttgcttttgtccaccagaaag 209  Q
    |||||| |||||||||||||| ||||| |||  |||||| || |  || || |||||||| || ||||||||||||||||| || |||||    
T  33788369 tgcactagttgcttcatcaagcagaagaattactggattttttatgatagctcttgcaatggctattctttgcttttgtcctcctgaaag 33788458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 212
Target Start/End: Original strand, 29936972 - 29937063
Alignment:
Q  121 gcacttgttgcttcatcaagaagaaggattcttggattcttcaatatggcccttgcaattgcaattctttgcttttgtccaccagaaagttg 212  Q
    |||||||| |||||||||||||| | ||||||||| |  ||||| || || ||||||||||||| ||||||||||||||| ||||| |||||    
T  29936972 gcacttgtagcttcatcaagaagtaagattcttgggtctttcaaaattgctcttgcaattgcaactctttgcttttgtcctccagagagttg 29937063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 206
Target Start/End: Complemental strand, 51146078 - 51145993
Alignment:
Q  121 gcacttgttgcttcatcaagaagaaggattcttggattcttcaatatggcccttgcaattgcaattctttgcttttgtccaccaga 206  Q
    |||||||| |||||||||||||| |||||||||||||  ||||| || || ||||||||||||| ||| |||||||| || |||||    
T  51146078 gcacttgtagcttcatcaagaagtaggattcttggatctttcaaaattgctcttgcaattgcaactctctgcttttgacctccaga 51145993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 206
Target Start/End: Complemental strand, 51157200 - 51157115
Alignment:
Q  121 gcacttgttgcttcatcaagaagaaggattcttggattcttcaatatggcccttgcaattgcaattctttgcttttgtccaccaga 206  Q
    |||||||| |||||||||||||| |||||||| || |  ||||| || || ||||||||||||| |||||||||||| || |||||    
T  51157200 gcacttgtagcttcatcaagaagtaggattctcgggtctttcaaaattgctcttgcaattgcaactctttgcttttgacctccaga 51157115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 121 - 212
Target Start/End: Complemental strand, 51213176 - 51213085
Alignment:
Q  121 gcacttgttgcttcatcaagaagaaggattcttggattcttcaatatggcccttgcaattgcaattctttgcttttgtccaccagaaagttg 212  Q
    |||||||||||||||||||| || || ||||||||||  ||||  || || ||||| || ||||||||||||||||| || ||||| |||||    
T  51213176 gcacttgttgcttcatcaaggagtagaattcttggatctttcagaattgctcttgctatagcaattctttgcttttggcctccagagagttg 51213085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 390
Target Start/End: Complemental strand, 22402432 - 22402397
Alignment:
Q  355 catgtgcttacattcaatcacttctattttctcaat 390  Q
    |||||| |||||||||||||||||||||||||||||    
T  22402432 catgtggttacattcaatcacttctattttctcaat 22402397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 221
Target Start/End: Complemental strand, 51200032 - 51199914
Alignment:
Q  103 tcagactcagcatccaatgcacttgttgcttcatcaagaagaaggattcttggattcttcaatatggcccttgcaattgcaattctttgcttttgtccac 202  Q
    ||||| |||||||| |  |||||||| |||||||| ||||| |  ||||||||||  ||||  || || ||||| ||||||| ||| ||||||||||| |    
T  51200032 tcagattcagcatcaagcgcacttgtagcttcatcgagaagtaatattcttggatctttcagaatcgctcttgctattgcaactctctgcttttgtcccc 51199933  T
Q  203 cagaaagttgagtcccatg 221  Q
    |||| || ||||| |||||    
T  51199932 cagagagctgagttccatg 51199914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 221
Target Start/End: Original strand, 38525277 - 38525396
Alignment:
Q  102 ttcagactcagcatccaatgcacttgttgcttcatcaagaagaaggattcttggattcttcaatatggcccttgcaattgcaattctttgcttttgtcca 201  Q
    |||||| || ||||| | ||||||||| |||||||||||||| || |||||||||||||| |  || || |||||||| ||||| |  ||||| ||||||    
T  38525277 ttcagattctgcatcaagtgcacttgtagcttcatcaagaagtagaattcttggattcttaaggattgctcttgcaatcgcaatgcgctgcttctgtcca 38525376  T
Q  202 ccagaaagttgagtcccatg 221  Q
    ||||| |||||||| |||||    
T  38525377 ccagacagttgagttccatg 38525396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 200
Target Start/End: Complemental strand, 27810515 - 27810421
Alignment:
Q  106 gactcagcatccaatgcacttgttgcttcatcaagaagaaggattcttggattcttcaatatggcccttgcaattgcaattctttgcttttgtcc 200  Q
    |||||||  |||| ||||||||| || ||||| || ||||| |||  |||||| ||||  || |||||||||||||| ||||| |||||||||||    
T  27810515 gactcagagtccagtgcacttgtagcctcatctaggagaagaattgctggatttttcagcattgcccttgcaattgctattctctgcttttgtcc 27810421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 209
Target Start/End: Original strand, 38566432 - 38566521
Alignment:
Q  120 tgcacttgttgcttcatcaagaagaaggattcttggattcttcaatatggcccttgcaattgcaattctttgcttttgtccaccagaaag 209  Q
    ||||||||| |||||||| ||||| |  |||||||||||||| | ||| || |||||||| ||||| |  ||||| || |||||||||||    
T  38566432 tgcacttgtagcttcatctagaagtaaaattcttggattcttaagtattgctcttgcaatggcaatgcgctgcttctgcccaccagaaag 38566521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 212
Target Start/End: Original strand, 49734082 - 49734192
Alignment:
Q  102 ttcagactcagcatccaatgcacttgttgcttcatcaagaagaaggattcttggattcttcaatatggcccttgcaattgcaattctttgcttttgtcca 201  Q
    ||||||||||||||| | ||||||||| |||||||| || || |  |||||||||||||| | |||||| ||||||||||| |  | |||||| |||||     
T  49734082 ttcagactcagcatcaagtgcacttgtggcttcatctagtagtaatattcttggattcttaactatggctcttgcaattgccacacgttgcttctgtcct 49734181  T
Q  202 ccagaaagttg 212  Q
    |||||||||||    
T  49734182 ccagaaagttg 49734192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 49736871 - 49736964
Alignment:
Q  121 gcacttgttgcttcatcaagaagaaggattcttggattcttcaatatggcccttgcaattgcaattctttgcttttgtccaccagaaagttgag 214  Q
    ||||||||||||||||| || || || ||||||||||  ||||  || || ||||| || || |||||||||||||| || |||||||||||||    
T  49736871 gcacttgttgcttcatctaggagtagaattcttggatctttcagaattgctcttgctatagctattctttgcttttggcctccagaaagttgag 49736964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 212
Target Start/End: Original strand, 41176819 - 41176916
Alignment:
Q  115 tccaatgcacttgttgcttcatcaagaagaaggattcttggattcttcaatatggcccttgcaattgcaattctttgcttttgtccaccagaaagttg 212  Q
    ||||||||||||||||| ||||| || ||||| |||  |||||| || |  || |||||||| ||||| |||||||| |||||||| |||||||||||    
T  41176819 tccaatgcacttgttgcctcatcgaggagaagaattgctggattttttagcattgcccttgctattgctattctttgtttttgtcctccagaaagttg 41176916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 7861794 - 7861840
Alignment:
Q  157 ttcttcaatatggcccttgcaattgcaattctttgcttttgtccacc 203  Q
    ||||||||||| |||||||| || ||||||||||| |||||||||||    
T  7861794 ttcttcaatattgcccttgctatagcaattctttgtttttgtccacc 7861840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2774 times since January 2019
Visitors: 4801