View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0754_low_13 (Length: 414)

Name: NF0754_low_13
Description: NF0754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0754_low_13
NF0754_low_13
[»] chr4 (4 HSPs)
chr4 (1-320)||(12223837-12224156)
chr4 (353-396)||(16073449-16073492)
chr4 (353-396)||(40179597-40179640)
chr4 (353-390)||(29205529-29205566)
[»] chr7 (2 HSPs)
chr7 (353-396)||(21880207-21880250)
chr7 (356-396)||(7438772-7438812)
[»] chr8 (2 HSPs)
chr8 (356-390)||(18407780-18407814)
chr8 (354-390)||(31557057-31557093)
[»] chr6 (2 HSPs)
chr6 (355-396)||(10339077-10339118)
chr6 (336-396)||(12627521-12627581)


Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 12223837 - 12224156
Alignment:
Q  1 aagcttaaggaactagagaaagagaagggagttgttgtaaggttcatgattgggcatagcacaaccccaggaagcattcttgacaaatcacttgatgaag 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12223837 aagcttaaggaactagaaaaagagaagggagttgttgtaaggtttatgattgggcatagcacaacaccaggaagcattcttgacaaatcacttgatgaag 12223936  T
Q  101 aagaagcagaacacaatgatttccttaggttagaccatgttgaaggctaccatgaattatcatccaagacaagattattcttttcaactgttacttctat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12223937 aagaagcagaacacaatgatttccttaggttagaccatgttgaaggctaccatgaattatcatccaagacaagattattcttttcaactgttacttctat 12224036  T
Q  201 gtgggatgctgatttttatgtcaagattgatgatgatgtacatttaaatcttggtaagtctttttaatctcagtaatttaatttgcaacttcaattactc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||    
T  12224037 gtgggatgctgatttttatgtcaagattgatgatgatgtacatttaaatcttggtaagtctttttaatcttagtaatttaatttgtaacttcaatcactc 12224136  T
Q  301 tgttctcctccccgttaaca 320  Q
    ||||||||||||||||||||    
T  12224137 tgttctcctccccgttaaca 12224156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 396
Target Start/End: Complemental strand, 16073492 - 16073449
Alignment:
Q  353 cggattaggcgtgtcatagtgtcggacatgtgtcgtgttcgaca 396  Q
    ||||||||||||||| ||||||||||||||| |||||| |||||    
T  16073492 cggattaggcgtgtcttagtgtcggacatgtatcgtgtccgaca 16073449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 396
Target Start/End: Original strand, 40179597 - 40179640
Alignment:
Q  353 cggattaggcgtgtcatagtgtcggacatgtgtcgtgttcgaca 396  Q
    ||||||||||||||||| |||||| ||||||||||||| |||||    
T  40179597 cggattaggcgtgtcatggtgtcgaacatgtgtcgtgtccgaca 40179640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 390
Target Start/End: Complemental strand, 29205566 - 29205529
Alignment:
Q  353 cggattaggcgtgtcatagtgtcggacatgtgtcgtgt 390  Q
    |||||||||||||||  |||||||||||||||||||||    
T  29205566 cggattaggcgtgtcccagtgtcggacatgtgtcgtgt 29205529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 396
Target Start/End: Complemental strand, 21880250 - 21880207
Alignment:
Q  353 cggattaggcgtgtcatagtgtcggacatgtgtcgtgttcgaca 396  Q
    ||||||||||||||| | |||||||||||||||||||| |||||    
T  21880250 cggattaggcgtgtcctggtgtcggacatgtgtcgtgtccgaca 21880207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 396
Target Start/End: Complemental strand, 7438812 - 7438772
Alignment:
Q  356 attaggcgtgtcatagtgtcggacatgtgtcgtgttcgaca 396  Q
    |||||||||||| |||||||| |||||||||||||| ||||    
T  7438812 attaggcgtgtcctagtgtcgcacatgtgtcgtgtttgaca 7438772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Complemental strand, 18407814 - 18407780
Alignment:
Q  356 attaggcgtgtcatagtgtcggacatgtgtcgtgt 390  Q
    |||||||||||| ||||||||||||||||||||||    
T  18407814 attaggcgtgtcctagtgtcggacatgtgtcgtgt 18407780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 390
Target Start/End: Complemental strand, 31557093 - 31557057
Alignment:
Q  354 ggattaggcgtgtcatagtgtcggacatgtgtcgtgt 390  Q
    |||||||||||||| | ||||||||||||||||||||    
T  31557093 ggattaggcgtgtcctggtgtcggacatgtgtcgtgt 31557057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 396
Target Start/End: Original strand, 10339077 - 10339118
Alignment:
Q  355 gattaggcgtgtcatagtgtcggacatgtgtcgtgttcgaca 396  Q
    |||||||||||||  ||||||||||||||||||||| |||||    
T  10339077 gattaggcgtgtcccagtgtcggacatgtgtcgtgtccgaca 10339118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 396
Target Start/End: Original strand, 12627521 - 12627581
Alignment:
Q  336 aaagcactgatattttacggattaggcgtgtcatagtgtcggacatgtgtcgtgttcgaca 396  Q
    |||||||||||||||  ||||||||| |||||   ||||||||||||||| |||| |||||    
T  12627521 aaagcactgatatttctcggattaggagtgtctcggtgtcggacatgtgtggtgtccgaca 12627581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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