View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0754_low_14 (Length: 406)
Name: NF0754_low_14
Description: NF0754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0754_low_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 30 - 406
Target Start/End: Complemental strand, 38010420 - 38010051
Alignment:
| Q |
30 |
ccattaaccatgtatcccgattttggttgataaccttttcaattaaagagatgtttgctacttccgaagttaggaatctgccaagagtagttaatttagt |
129 |
Q |
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| T |
38010420 |
ccattaaccatgtatcccgattttggttgataaccttttcaattaaagagatgtttgctacttccgaagttaggaatctgccaagagtagttaatttagt |
38010321 |
T |
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| Q |
130 |
aagagatagaatgtgttcttggcaaataggaaaattaagtagacttgtgtgcgattgactacttttgtgatatatgtatggtatttgatgc---ttgtat |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38010320 |
aagagatagaatgtgttcttggcaaataggaaaattaagtagacttgtgtgcgattgactacttttgtgatatatgtatggtatttgatgcttgttgtat |
38010221 |
T |
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| Q |
227 |
attgcatgtgcttattaaaaagtgaaatctagggtagtgatattttctttggataaagttagtactatttatctcggacccggattccccgttacatgaa |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38010220 |
attgcatgtgcttattaaaaagtgaaatctagggtagtgatattttctttggataaagttagtactatttatctcggacccggattcccc---------- |
38010131 |
T |
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| Q |
327 |
gttacgtggtgtttggcgtctcgaacgttaatcaaaattggacggttcaaattgcgcactaacaaaatcaattgcaaact |
406 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
38010130 |
gttacgtggtgtttggcgtctcgaccgttaatcaaaattggacggttcaaattgcacacaaacaaaatcaattgcaaact |
38010051 |
T |
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