View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0754_low_16 (Length: 363)
Name: NF0754_low_16
Description: NF0754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0754_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 18668423 - 18668759
Alignment:
| Q |
1 |
taatcataaaagagcgtttcgattttgaagtaccggttaaataggcaaactaatgtaaatgatcggaaacaacatacggggaggccgaaacaaagcttag |
100 |
Q |
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| T |
18668423 |
taatcataaaagagcgtttcgattttgaagtaccggctaaataggcaaactaatgtaaatgatcggaaacaacatacggggaggccgaaacaaagcttag |
18668522 |
T |
|
| Q |
101 |
ccaccgaagcacgtaataccacaacgatccaaacacaatacaattcagaaaatgggtgagccgcagattctaaatgactgcacccactcacacaaagctg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||| |||||||||||| |
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| T |
18668523 |
ccaccgaagcacgtaataccacaacgatccaaacacaatacaattcagaaaatgggtgagccgcagattcttagtgaccgcacccatccacacaaagctg |
18668622 |
T |
|
| Q |
201 |
agcatcttgtggaataatacgatgtttgtaaattgtcctcagcaggcaatctattccacaataatagccaaacaaacaaagacaccttcaaagggatatc |
300 |
Q |
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| T |
18668623 |
aacatcttgtggaataatacgatgtttgtaaattgtcct---taggcaatctattccgcaataatagccaaacaaacaaagacaccttcaaagggatatc |
18668719 |
T |
|
| Q |
301 |
ttgattccaaaagtaatccatgaccacagccacctgatga |
340 |
Q |
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| T |
18668720 |
ttgattccaaaagtaatccaggaccacaaccacctgatga |
18668759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 8 - 197
Target Start/End: Original strand, 36389991 - 36390163
Alignment:
| Q |
8 |
aaaagagcgtttcgattttgaagtaccggttaaataggcaaactaatgtaaatgatcggaaacaacatacggggaggccgaaacaaagcttagccaccga |
107 |
Q |
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| T |
36389991 |
aaaagagcatttcaattttgaagtaccgactaaataggaaaactgaagtaaatgatcgaaaacaacaaatggggaggccgaagca--------------a |
36390076 |
T |
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| Q |
108 |
agcacgtaataccacaacgatccaaacacaatacaattcagaaaatgggtgagccgcagattctaaatgactgcacccactcacacaaag |
197 |
Q |
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||||| ||||| ||||||||||||||||| ||||||||||||| ||||| | |||||||||||||||| |||||||||||||||||| |
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| T |
36390077 |
agcacataata--acaacgatccaaacacaggacaattcagaaaa-aggtgatctgcagattctaaatgaccgcacccactcacacaaag |
36390163 |
T |
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