View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0754_low_18 (Length: 356)
Name: NF0754_low_18
Description: NF0754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0754_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 21 - 303
Target Start/End: Original strand, 29900199 - 29900478
Alignment:
| Q |
21 |
acatcatcaataaaagtaatgaaaccaaaatatcatattattataaataaataaatgcgatgtaaaacagaacctctccttgatcacacagtacagcaac |
120 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29900199 |
acatcatcaataaaagtaatgaaaccaaaaaatcatattattataaa---ataaatgcgatgtaaaacagaacctctccttgatcacacagtacagcaac |
29900295 |
T |
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| Q |
121 |
tatagtccaagattagtggtcaagggagaaaataattttcagcgtaacaaaaaaccataatcagctattacatatagtcataaacattgaatagttatta |
220 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29900296 |
tatagtcaaagattagtggtcaagggagaaaataattttcagcgtgacaaaaaaccataatcagctgttacatatagtcataaacattgaatagttatta |
29900395 |
T |
|
| Q |
221 |
aaacttcactatactttaattccaaaatcttccttcaattttcatgcactaggtttatcagcacctgccaattttcttctctg |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29900396 |
aaacttcactatactttaattccaaaatcttccttcaattctcatgcactaggtttatcagcacctgccaattttcttctctg |
29900478 |
T |
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