View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0754_low_2 (Length: 676)
Name: NF0754_low_2
Description: NF0754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0754_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 105 - 630
Target Start/End: Complemental strand, 52512387 - 52511842
Alignment:
| Q |
105 |
ttgtttcgaggcgtcaatgtcttaaatgtttgtgttcaactccatttttaattaatgcaaccaactcagcagcaaccgctcttgataagcctcctggttg |
204 |
Q |
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| T |
52512387 |
ttgtttcgaggcgtcaatgtcttaaatgtttgtgttcaactccatttttaattaatgcaaccaactcagcagcaaccgctcttgataagcctcctggttg |
52512288 |
T |
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| Q |
205 |
cagaaattgtggtggaagtggtaacatcatttgtgagtcctcttctcttttctcctcattctttttta-----------ataataatattcttcttcctt |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| | ||||||||| |
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| T |
52512287 |
cagaaattgtggtggaagtggtaacatcatttgtgagtcctcttctcttttctcttcattctttgttataataataataataataataatattcttcctt |
52512188 |
T |
|
| Q |
294 |
attataatactacttttcattt----------aggtgatatgtgtggtggtacaggaaaatggaaagctcttaacaggaagcgagcacaagatgtttatg |
383 |
Q |
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| T |
52512187 |
attataatactacttttcatttcatttcatttaggtgatatgtgtggtggtacaggaaaatggaaagctcttaacaggaagcgagcacaagatgtttatg |
52512088 |
T |
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| Q |
384 |
aatttactgaatgtcctaattgttatggtatcattcattcttctactttgctcatttcnnnnnnnncttagtaaacgactaaattgacagattttccgta |
483 |
Q |
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| T |
52512087 |
aatttactgaatgtcctaattgttatggtatcattcattcttctaatttgctcatttcttttttt-cttagtaaacgactaaattgactgattttccgta |
52511989 |
T |
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| Q |
484 |
ggtcgaggaaagcttgtccgccctgtttgtttaggaactggtgtaccaaacaataaaggtcttctcaggaggcctgacgcaaagaaactgcttgataaga |
583 |
Q |
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| T |
52511988 |
ggtcgaggaaagcttgtctgccctgtttgtttaggaactggtgtgccaaacaataaaggtcttctcaggaggcctgacgcaaagaaactgcttgataaga |
52511889 |
T |
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| Q |
584 |
tgtataatggacgcctacttccaaattcttagaaggtatgtatacta |
630 |
Q |
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| T |
52511888 |
tgtataatggacgcctacttcccaattcttagaaggtatgtatacta |
52511842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 52512489 - 52512413
Alignment:
| Q |
10 |
ttatatacgagtttcaattcaatttcaattactcactcactca----tcattaacttaattaattgcattcatatag |
82 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52512489 |
ttatatatgagtttcaattcaatttcaattactcactcactcactcatcattaacttaattaattgcattcatatag |
52512413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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