View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0754_low_24 (Length: 326)
Name: NF0754_low_24
Description: NF0754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0754_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 236
Target Start/End: Original strand, 18047368 - 18047603
Alignment:
| Q |
4 |
gctaaacaacctgagagggaggttagaattaaaagggttgaatttcctgcgaaataatgctgcaaagattgaatctgcaaaagtacttcttgagaagcaa |
103 |
Q |
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| T |
18047368 |
gctaaacaacctgagagggagattagaattaaaagggttgaatttcctgcgaaataatgctgcagagattgaatctgcaaaagtacttgttgagaagcga |
18047467 |
T |
|
| Q |
104 |
caccttcaacaattggaattgcgatggaatcatgtcgaccagaatgagatcatggaggaagatgagatcattttacaaggcctgcagcca---caccatt |
200 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
18047468 |
caccttcaacatttggaattacgatggaatcatgtcgaccagaatgagatcatggaggaagatgagatcattttacaaggcctgcagccacaccaccact |
18047567 |
T |
|
| Q |
201 |
cgcttcaaaaactagttatagacgggttttgcggca |
236 |
Q |
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| |||| ||||||||||||||| ||||||||||||| |
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| T |
18047568 |
cacttcgaaaactagttatagatgggttttgcggca |
18047603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 18033786 - 18033647
Alignment:
| Q |
3 |
agctaaacaacctgagagggaggttagaattaaaagggttgaatttcctgcgaaataatgctgcaaagattgaatctgcaaaagtacttcttgagaagca |
102 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18033786 |
agctaaacaacctgagagggagattagaattaaaagggttgaatttcctgcgaaataatgctgaaaagattgaatctgcaaaagtacttcttgagaagcg |
18033687 |
T |
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| Q |
103 |
acaccttcaacaattggaattgcgatggaatcatgtcgac |
142 |
Q |
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| T |
18033686 |
acaccttcaacaattggaattgcgatggaatcatgtcgac |
18033647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 18033599 - 18033520
Alignment:
| Q |
160 |
ggaagatgagatcattttacaaggcctgcagccac---accattcgcttcaaaaactagttatagacgggttttgcggca |
236 |
Q |
| |
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|||||||||||||||||| | |||||||||||||| |||| || |||| ||||||||||||||| |||||||| |||| |
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| T |
18033599 |
ggaagatgagatcatttttctaggcctgcagccacaccaccactcacttcgaaaactagttatagatgggttttgtggca |
18033520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 4397958 - 4397723
Alignment:
| Q |
4 |
gctaaacaacctgagagggaggttagaattaaaagggttgaatttcctgcgaaataatgctgcaaagattgaatctgcaaaagtacttcttgagaagcaa |
103 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | |
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| T |
4397958 |
gctaaacaacctgagagggagattagaattaaaagggttgaatttcctgcgaaataatgctgcagagattgaatctgcaaaagtacttgttgagaagcga |
4397859 |
T |
|
| Q |
104 |
caccttcaacaattggaattgcgatggaatcatgtcgaccagaatgagatcatggaggaagatgagatcattttacaaggcctgcagccac---accatt |
200 |
Q |
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| T |
4397858 |
caccttcaacatttggaattacgatggaatcatgtcgaccagaatgagatcatggaggaagatgagatcattttacaaggcctgcagccacaccaccact |
4397759 |
T |
|
| Q |
201 |
cgcttcaaaaactagttatagacgggttttgcggca |
236 |
Q |
| |
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| |||| ||||||||||||||| ||||||||||||| |
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| T |
4397758 |
cacttcgaaaactagttatagatgggttttgcggca |
4397723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 4498683 - 4498822
Alignment:
| Q |
3 |
agctaaacaacctgagagggaggttagaattaaaagggttgaatttcctgcgaaataatgctgcaaagattgaatctgcaaaagtacttcttgagaagca |
102 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4498683 |
agctaaacaacctgagagggagattagaattaaaagggttgaatttcctgcgaaataatgctgaaaagattgaatctgcaaaagtacttcttgagaagtg |
4498782 |
T |
|
| Q |
103 |
acaccttcaacaattggaattgcgatggaatcatgtcgac |
142 |
Q |
| |
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| T |
4498783 |
acaccttcaacaattggaattgcgatggaatcatgtcgac |
4498822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 4519743 - 4519882
Alignment:
| Q |
3 |
agctaaacaacctgagagggaggttagaattaaaagggttgaatttcctgcgaaataatgctgcaaagattgaatctgcaaaagtacttcttgagaagca |
102 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
4519743 |
agctaaacaacctgagagggagattagaattaaaagggttgaagttcctgcgaaataatgctgcagagattgaatctgcaaaagtacttgttgagaagcg |
4519842 |
T |
|
| Q |
103 |
acaccttcaacaattggaattgcgatggaatcatgtcgac |
142 |
Q |
| |
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| T |
4519843 |
acaccttcaacaattggaattgcgatggaatcatgtcgac |
4519882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 160 - 242
Target Start/End: Original strand, 4530142 - 4530224
Alignment:
| Q |
160 |
ggaagatgagatcattttacaaggcctgcagccacaccattcgcttcaaaaactagttatagacgggttttgcggcaaaaagt |
242 |
Q |
| |
|
||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4530142 |
ggaagatgagaagattttagaaggtctgcagccacaccattcgcttcaaaaactagttatagatgggttttgcggcaaaaagt |
4530224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 4529931 - 4530051
Alignment:
| Q |
3 |
agctaaacaacctgagagggaggttagaattaaaagggttgaatttcctgcgaaataatgctgcaaagattgaatctgcaaaagtacttcttgagaagca |
102 |
Q |
| |
|
||||||||||||| ||||| || |||||| ||||| ||||| ||||||||||||| ||||||| ||||||||| || ||||||||||||||||||| | |
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|
| T |
4529931 |
agctaaacaaccttagaggaagattagaaataaaaaggttggatttcctgcgaaacgctgctgcagagattgaatttgtaaaagtacttcttgagaagga |
4530030 |
T |
|
| Q |
103 |
acaccttcaacaattggaatt |
123 |
Q |
| |
|
||||||||| | ||||||||| |
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| T |
4530031 |
acaccttcagctattggaatt |
4530051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 242
Target Start/End: Original strand, 4519957 - 4520042
Alignment:
| Q |
160 |
ggaagatgagatcattttacaaggcctgcagcca---caccattcgcttcaaaaactagttatagacgggttttgcggcaaaaagt |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||||||||| |
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| T |
4519957 |
ggaagatgagatcattttacaaggcctgcagccacaccaccattcacttcgaaaactagttatagatgggttttgcggcaaaaagt |
4520042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 4498870 - 4498949
Alignment:
| Q |
160 |
ggaagatgagatcattttacaaggcctgcagcca---caccattcgcttcaaaaactagttatagacgggttttgcggca |
236 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||| ||||| || |||| ||||||||||||||| |||||||| |||| |
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|
| T |
4498870 |
ggaagatgagatcatttttctaggcctgcagccacaccaccactcacttcgaaaactagttatagatgggttttgtggca |
4498949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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