View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0754_low_25 (Length: 326)
Name: NF0754_low_25
Description: NF0754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0754_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 81 - 274
Target Start/End: Original strand, 32165392 - 32165585
Alignment:
| Q |
81 |
acatcatcatattactcagattcacacaacagctatgnnnnnnngtacagtaataataacaaatacagttaacagttaaataaataagcaaacataccac |
180 |
Q |
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| T |
32165392 |
acatcatcatattactcagattcacacaacagctatgtttttttgtacagtaataataacaaatacagttaacagttaaataaataagcaaacataccac |
32165491 |
T |
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| Q |
181 |
gtagtatttgacatgtttctttgccatttgatgatgagggaacaagtgttggagataaaactggtcaaagcccctatgaatgctgtggacacag |
274 |
Q |
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| T |
32165492 |
gtagtatttgacatgtttctttgccatttgatgatgagggaacaagtgttggagataaaactggtcaaagcccctatggatgctgtggacacag |
32165585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 27325372 - 27325408
Alignment:
| Q |
172 |
acataccacgtagtatttgacatgtttctttgccatt |
208 |
Q |
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| T |
27325372 |
acataccacgtagtacttgacaggtttctttgccatt |
27325408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 27350428 - 27350464
Alignment:
| Q |
172 |
acataccacgtagtatttgacatgtttctttgccatt |
208 |
Q |
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| T |
27350428 |
acataccccgtagtacttgacatgtttctttgccatt |
27350464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 32169280 - 32169316
Alignment:
| Q |
172 |
acataccacgtagtatttgacatgtttctttgccatt |
208 |
Q |
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| T |
32169280 |
acataccacgtagtatttcacaggtttctttgccatt |
32169316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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