View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0754_low_28 (Length: 319)
Name: NF0754_low_28
Description: NF0754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0754_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 8e-92; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 97 - 275
Target Start/End: Original strand, 38180096 - 38180274
Alignment:
| Q |
97 |
aacaagtactttagggttggtttcttcatctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagag |
196 |
Q |
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| T |
38180096 |
aacaagtactttagggttggtttcttcatatagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagag |
38180195 |
T |
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| Q |
197 |
ggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtga |
275 |
Q |
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| T |
38180196 |
ggaaggtcacggctttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtga |
38180274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 97 - 277
Target Start/End: Original strand, 38184765 - 38184945
Alignment:
| Q |
97 |
aacaagtactttagggttggtttcttcatctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagag |
196 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38184765 |
aacaagtactgtagggttggtttcttcatctagaacttgaatttgttctttgaaagatcgagtagcgatagtatatatatttgaagataataaaaaagag |
38184864 |
T |
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| Q |
197 |
ggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatg |
277 |
Q |
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| T |
38184865 |
ggaaggtcacggctttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatg |
38184945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 98 - 277
Target Start/End: Original strand, 38170283 - 38170462
Alignment:
| Q |
98 |
acaagtactttagggttggtttcttcat-ctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagag |
196 |
Q |
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||||||||| | |||||| ||||||||| | | |||| ||||||| ||||||| |||| || ||| | ||||||| ||||||||| |||||||||||| |
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| T |
38170283 |
acaagtactcttgggttgatttcttcattcaacaact-gaatttgctctttgagagatggaagagcaaaagtgtatgtatttgaagccaataaaaaagag |
38170381 |
T |
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| Q |
197 |
ggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatg |
277 |
Q |
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|||||||| || |||| |||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
38170382 |
ggaaggtcgcggcttttaagagagaatgacaatcccggtaatgatattaaacacgtttcatcctttgatttgtttgtgatg |
38170462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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