View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0754_low_32 (Length: 311)
Name: NF0754_low_32
Description: NF0754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0754_low_32 |
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| [»] chr1 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0301 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 71 - 311
Target Start/End: Original strand, 38739138 - 38739377
Alignment:
| Q |
71 |
cataggagaagaaaaggaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagaaaagaaaattcccaagcggttat |
170 |
Q |
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| T |
38739138 |
cataggagaagaaaaggaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagataagaaaattcccaagcggttat |
38739237 |
T |
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| Q |
171 |
atttaacttttctgttatttaaaaaatttacaagtgggatgagtaggacnnnnnnnnntcacaagagtttgtaggataaaaaatttacaagtattttcgt |
270 |
Q |
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| T |
38739238 |
atttaacttttctgttatttaaaaaatttacaagtgggatgagtaggac-aaaaaaaatcacaagagtttgtaggataaaaaatttacaagtattttcgt |
38739336 |
T |
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| Q |
271 |
tgaatttgcacgacaagtttatcgtgcgatatagcacttct |
311 |
Q |
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| T |
38739337 |
tgaatttgcgcgataagtttatcgtgcgatatagcacttct |
38739377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 71 - 311
Target Start/End: Original strand, 38151679 - 38151917
Alignment:
| Q |
71 |
cataggagaagaaaaggaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagaaaagaaaattcccaagcggttat |
170 |
Q |
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| T |
38151679 |
cataggagaagaaaatgaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagaaaagaaaattcccaagcggttat |
38151778 |
T |
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| Q |
171 |
atttaacttttctgttatttaaaaaatttacaagtgggatgagtaggacnnnnnnnnntcacaagagtttgtaggataaaaaatttacaagtattttcgt |
270 |
Q |
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| T |
38151779 |
a-ttaacttttctgttatttaaaaaatttacaagtgggatgagtaggac-aaaataaatcacaagagtttgtaggataaaaaatttacaagtattttcgt |
38151876 |
T |
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| Q |
271 |
tgaatttgcacgacaagtttatcgtgcgatatagcacttct |
311 |
Q |
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| T |
38151877 |
tgaatttgcgcgacaagtttatcgtgcgatatagcacttct |
38151917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 71 - 311
Target Start/End: Original strand, 29059461 - 29059700
Alignment:
| Q |
71 |
cataggagaagaaaaggaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagaaaagaaaattcccaagcggttat |
170 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29059461 |
cataagagaagaaaaggaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagaaaagaaaattctcaagcggttat |
29059560 |
T |
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| Q |
171 |
atttaacttttctgttatttaaaaaatttacaagtgggatgagtaggacnnnnnnnnntcacaagagtttgtaggataaaaaatttacaagtattttcgt |
270 |
Q |
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| T |
29059561 |
atttaacttttctgttatttaaaaaatttacaagtgggaagagtaggac-aaaaaaaatcacaagagctcgtaggataaaaaaattacaagtattttcgt |
29059659 |
T |
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| Q |
271 |
tgaatttgcacgacaagtttatcgtgcgatatagcacttct |
311 |
Q |
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| T |
29059660 |
tgaatttgcgcgacaagtttatcgtgcgatatagcacttct |
29059700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0301 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0301
Description:
Target: scaffold0301; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 71 - 311
Target Start/End: Original strand, 8611 - 8850
Alignment:
| Q |
71 |
cataggagaagaaaaggaatagaatgaagggtccttattatgatcaattagatgaagaaattccaccgtcaaaaagaaaagaaaattcccaagcggttat |
170 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8611 |
cataagagaagaaaaggaatagaatgaagggtccttattatgatcaactagatgaagaaattccaccgtcaaaaagaaaagaaaattctcaagcggttat |
8710 |
T |
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| Q |
171 |
atttaacttttctgttatttaaaaaatttacaagtgggatgagtaggacnnnnnnnnntcacaagagtttgtaggataaaaaatttacaagtattttcgt |
270 |
Q |
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| T |
8711 |
atttaacttttctgttatttaaaaaatttacaagtgggaagagtaggac-aaaaaaaatcacaagagctcgtaggataaaaaatttacaagtattttcgt |
8809 |
T |
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| Q |
271 |
tgaatttgcacgacaagtttatcgtgcgatatagcacttct |
311 |
Q |
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| T |
8810 |
tgaatttgcgcgacaagtttatcgtgcgatatagcatttct |
8850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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