View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0754_low_34 (Length: 302)
Name: NF0754_low_34
Description: NF0754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0754_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 133 - 252
Target Start/End: Complemental strand, 9534766 - 9534648
Alignment:
| Q |
133 |
taagaggcatgacaaattaaacacacaatcgatttttaaagtcgtttattttgatgatagtcaaactttatatggtaagaaacaaatatctcattgtcgg |
232 |
Q |
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| T |
9534766 |
taagaggcatgacaaattaaacacacaatcaatttt-aaagtcgtttattttgatgatagtcaaactttatatggtaagaaacaaatatctcattgccgg |
9534668 |
T |
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| Q |
233 |
ctcgatgtttattaccatag |
252 |
Q |
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| T |
9534667 |
ctcgatgtttattaccatag |
9534648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 253
Target Start/End: Complemental strand, 9535919 - 9535827
Alignment:
| Q |
161 |
tcgatttttaaagtcgtttattttgatgatagtcaaactttatatggtaagaaacaaatatctcattgtcggctcgatgtttattaccataga |
253 |
Q |
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| T |
9535919 |
tcgatttctagattcgtctatttcgaagatagtctaactttatatagtaagaaacgaatatgtcatcgtcgattcaatgcttattaccataga |
9535827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 3793845 - 3793887
Alignment:
| Q |
71 |
gacatcatctcttaaaatgtgtgatttggtcaattttgcttat |
113 |
Q |
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| T |
3793845 |
gacatcatttcttaaaatatgtgatttggtcaattttgcttat |
3793887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 12814216 - 12814258
Alignment:
| Q |
71 |
gacatcatctcttaaaatgtgtgatttggtcaattttgcttat |
113 |
Q |
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| T |
12814216 |
gacatcatttcttaaaatatgtgatttggtcaattttgcttat |
12814258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 1652176 - 1652134
Alignment:
| Q |
71 |
gacatcatctcttaaaatgtgtgatttggtcaattttgcttat |
113 |
Q |
| |
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|||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
1652176 |
gacatcatttcttaaaatatgtgatttggtcaattttgcttat |
1652134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 9132027 - 9132069
Alignment:
| Q |
71 |
gacatcatctcttaaaatgtgtgatttggtcaattttgcttat |
113 |
Q |
| |
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|||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
9132027 |
gacatcatttcttaaaatatgtgatttggtcaattttgcttat |
9132069 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 37149830 - 37149788
Alignment:
| Q |
71 |
gacatcatctcttaaaatgtgtgatttggtcaattttgcttat |
113 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||| |
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|
| T |
37149830 |
gacatcatttcttaaaatatgtgatttggtcaattttgcttat |
37149788 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 45220150 - 45220108
Alignment:
| Q |
71 |
gacatcatctcttaaaatgtgtgatttggtcaattttgcttat |
113 |
Q |
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|||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
45220150 |
gacatcatttcttaaaatatgtgatttggtcaattttgcttat |
45220108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 113
Target Start/End: Complemental strand, 23778104 - 23778062
Alignment:
| Q |
71 |
gacatcatctcttaaaatgtgtgatttggtcaattttgcttat |
113 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||| |
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|
| T |
23778104 |
gacatcatttcttaaaatatgtgatttggtcaattttgcttat |
23778062 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 52638838 - 52638880
Alignment:
| Q |
71 |
gacatcatctcttaaaatgtgtgatttggtcaattttgcttat |
113 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
52638838 |
gacatcatttcttaaaatatgtgatttggtcaattttgcttat |
52638880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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