View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0754_low_35 (Length: 297)

Name: NF0754_low_35
Description: NF0754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0754_low_35
NF0754_low_35
[»] chr5 (3 HSPs)
chr5 (89-222)||(39349920-39350053)
chr5 (100-157)||(1011192-1011249)
chr5 (131-195)||(25002194-25002257)
[»] chr1 (7 HSPs)
chr1 (99-196)||(40187972-40188069)
chr1 (99-196)||(50483956-50484053)
chr1 (135-223)||(40188068-40188156)
chr1 (96-178)||(40722164-40722246)
chr1 (135-202)||(50484052-50484119)
chr1 (107-170)||(40722712-40722775)
chr1 (107-195)||(51694165-51694254)
[»] chr4 (7 HSPs)
chr4 (99-196)||(48500863-48500960)
chr4 (135-202)||(48500797-48500864)
chr4 (108-184)||(23757622-23757698)
chr4 (113-195)||(17522247-17522329)
chr4 (114-185)||(5433072-5433143)
chr4 (141-193)||(5236573-5236625)
chr4 (163-195)||(25421013-25421045)
[»] chr3 (2 HSPs)
chr3 (135-223)||(54353488-54353576)
chr3 (99-196)||(54353393-54353489)
[»] chr8 (6 HSPs)
chr8 (118-196)||(41637340-41637418)
chr8 (96-195)||(20066434-20066533)
chr8 (135-202)||(41637417-41637484)
chr8 (106-170)||(20066926-20066990)
chr8 (102-134)||(41637291-41637323)
chr8 (99-145)||(12819811-12819857)
[»] chr7 (2 HSPs)
chr7 (107-195)||(19218645-19218734)
chr7 (100-150)||(40918040-40918090)
[»] chr6 (2 HSPs)
chr6 (99-195)||(23638783-23638879)
chr6 (89-145)||(1756603-1756659)
[»] scaffold0081 (1 HSPs)
scaffold0081 (129-195)||(42762-42829)
[»] scaffold0041 (1 HSPs)
scaffold0041 (100-150)||(55005-55055)


Alignment Details
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 89 - 222
Target Start/End: Original strand, 39349920 - 39350053
Alignment:
Q  89 acatcatcatcatcatataactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaactca 188  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39349920 acatcaccaccatcatataactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaattcaattcatcttcaactacaaactca 39350019  T
Q  189 attcaaatatgacaatattcacatcttcttctct 222  Q
    ||||||||||||||||||||| ||||||||||||    
T  39350020 attcaaatatgacaatattcatatcttcttctct 39350053  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 1011192 - 1011249
Alignment:
Q  100 atcatataactcacaatcaaaattaacactcatttatcaaattcatcaccttcaacca 157  Q
    ||||| |||||||||||||||| |||||   ||||||||||||||||||||| |||||    
T  1011192 atcatctaactcacaatcaaaactaacatcaatttatcaaattcatcacctttaacca 1011249  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 25002194 - 25002257
Alignment:
Q  131 atttatcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaactcaattcaaa 195  Q
    ||||||| ||| ||||||||||||| |||||| || |||||||||||| ||||||||||| ||||    
T  25002194 atttatccaatccatcaccttcaacaacaaattca-ttcatcttcaaccacaaactcaatgcaaa 25002257  T

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Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 40187972 - 40188069
Alignment:
Q  99 catcatataactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaactcaattcaaat 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  40187972 catcatataactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaacgacaaactcaatttaaat 40188069  T

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Target: chr1; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 50483956 - 50484053
Alignment:
Q  99 catcatataactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaactcaattcaaat 196  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||    
T  50483956 catcatataactcacaatcaaaattcacactcatttatcaaattcatcaccttcaaccacaaatccaaatcatcttcaaccacaaactcaatttaaat 50484053  T

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Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 40188068 - 40188156
Alignment:
Q  135 atcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaactcaattcaaatatgacaatattcacatcttcttctctc 223  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40188068 atcaaattcatcaccttcaaccacaaattcaattcatcttcaactacaaactcaattcaaatatgacaatattcatatcttcttctctc 40188156  T

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Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 178
Target Start/End: Original strand, 40722164 - 40722246
Alignment:
Q  96 catcatcatataactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaac 178  Q
    |||| |||| |||||||||||||||||||||||||||||||||||| |||| |||||||||  |||||||||| |||||||||    
T  40722164 catcttcatctaactcacaatcaaaattaacactcatttatcaaatccatcgccttcaaccgtaaatccaatttatcttcaac 40722246  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 50484052 - 50484119
Alignment:
Q  135 atcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaactcaattcaaatatgaca 202  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||| |||||||||||| ||| |||||    
T  50484052 atcaatttcatcaccctcaaccacaaattcaattcatcttcaactgcaaactcaattccaatctgaca 50484119  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 170
Target Start/End: Complemental strand, 40722775 - 40722712
Alignment:
Q  107 aactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattca 170  Q
    |||||||||||||||||||||| |||||||||||| ||||| ||||||||| |||  |||||||    
T  40722775 aactcacaatcaaaattaacacccatttatcaaatccatcatcttcaaccagaaactcaattca 40722712  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 51694254 - 51694165
Alignment:
Q  107 aactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatc-caattcatcttcaactacaaactcaattcaaa 195  Q
    |||||| |||||||| |||||  |||||||||||||||||||||| ||| | |||||  | |||||||||| | ||||||||||||||||    
T  51694254 aactcataatcaaaactaacatccatttatcaaattcatcacctttaacgataaatcagatttcatcttcatccacaaactcaattcaaa 51694165  T

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Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 99 - 196
Target Start/End: Complemental strand, 48500960 - 48500863
Alignment:
Q  99 catcatataactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaactcaattcaaat 196  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||    
T  48500960 catcatatagctcacaatcaaaattaacacccatttatcaaattcatcatcttcaaccacaaatccaattcatcttcaaccacaaactcaatttaaat 48500863  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 48500864 - 48500797
Alignment:
Q  135 atcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaactcaattcaaatatgaca 202  Q
    |||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||| |||||    
T  48500864 atcaaattcatcaccttcaatcataaattcaattcatcttcaactacaaactcaattcaaatctgaca 48500797  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 23757698 - 23757622
Alignment:
Q  108 actcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaa 184  Q
    ||||| |||||||| |||||||||||||||||| ||||||| || ||||| ||||| | |||||||||||| |||||    
T  23757698 actcataatcaaaactaacactcatttatcaaagtcatcactttaaaccataaatctagttcatcttcaaccacaaa 23757622  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 195
Target Start/End: Complemental strand, 17522329 - 17522247
Alignment:
Q  113 caatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaactcaattcaaa 195  Q
    ||||||||| |||||  ||||||||||||   ||||||| ||||| ||||| | |||||||||||| ||||||||||||||||    
T  17522329 caatcaaaactaacatacatttatcaaatctttcacctttaaccataaatctagttcatcttcaaccacaaactcaattcaaa 17522247  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 185
Target Start/End: Complemental strand, 5433143 - 5433072
Alignment:
Q  114 aatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaac 185  Q
    |||||||| |||||||||||||||||| ||||||| || ||||| ||||  | |||||||||||| ||||||    
T  5433143 aatcaaaactaacactcatttatcaaagtcatcactttaaaccataaatttagttcatcttcaaccacaaac 5433072  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 5236573 - 5236625
Alignment:
Q  141 ttcatcaccttcaaccacaaatccaattcatcttcaactacaaactcaattca 193  Q
    ||||||||||||||| ||||||||||||||  || ||| ||||||||||||||    
T  5236573 ttcatcaccttcaacaacaaatccaattcacatttaaccacaaactcaattca 5236625  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 25421013 - 25421045
Alignment:
Q  163 ccaattcatcttcaactacaaactcaattcaaa 195  Q
    |||||||||||||||| ||||||||||||||||    
T  25421013 ccaattcatcttcaaccacaaactcaattcaaa 25421045  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 54353488 - 54353576
Alignment:
Q  135 atcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaactcaattcaaatatgacaatattcacatcttcttctctc 223  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  54353488 atcaaattcatcaccttcaactacaaattcaattcatcttcaactacaaactcaattcaaatctgacaatattcatatcttcttctctc 54353576  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 54353393 - 54353489
Alignment:
Q  99 catcatataactcacaatcaaaatt-aacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaactcaattcaaat 196  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  54353393 catcatataactca--atcaaaatttaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaacgacaaactcaatttaaat 54353489  T

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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 41637340 - 41637418
Alignment:
Q  118 aaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaactcaattcaaat 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  41637340 aaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaaccacaaactcaatttaaat 41637418  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 96 - 195
Target Start/End: Original strand, 20066434 - 20066533
Alignment:
Q  96 catcatcatataactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaactcaattcaaa 195  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||  ||| |||||||| | |||||||||| ||||||||| | ||||||||||||||    
T  20066434 catcttcatctaactcacaatcaaaattaacactcatttatcaaatcaatcgccttcaactataaatccaatttatcttcaaccataaactcaattcaaa 20066533  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 41637417 - 41637484
Alignment:
Q  135 atcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaactcaattcaaatatgaca 202  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  41637417 atcaaattcatcaccctcaaccacaaattcaattcatcttcaactacaaactcaattcaaatctgaca 41637484  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 20066990 - 20066926
Alignment:
Q  106 taactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattca 170  Q
    |||||||||||||||||||||||  ||||||||||| ||||| |||||||||||||  |||||||    
T  20066990 taactcacaatcaaaattaacacctatttatcaaatccatcatcttcaaccacaaactcaattca 20066926  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 41637291 - 41637323
Alignment:
Q  102 catataactcacaatcaaaattaacactcattt 134  Q
    |||||||||||||||||||||||||||||||||    
T  41637291 catataactcacaatcaaaattaacactcattt 41637323  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 12819857 - 12819811
Alignment:
Q  99 catcatataactcacaatcaaaattaacactcatttatcaaattcat 145  Q
    |||||| | |||||||||||||| |||||| ||||||||||||||||    
T  12819857 catcatcttactcacaatcaaaactaacacccatttatcaaattcat 12819811  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 19218734 - 19218645
Alignment:
Q  107 aactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatc-caattcatcttcaactacaaactcaattcaaa 195  Q
    |||||| |||||||| |||||  |||||||||||||||||||||| ||||| |||||  | |||||||||| | ||||||||||||||||    
T  19218734 aactcataatcaaaactaacatccatttatcaaattcatcacctttaaccataaatcagatttcatcttcatccacaaactcaattcaaa 19218645  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 40918090 - 40918040
Alignment:
Q  100 atcatataactcacaatcaaaattaacactcatttatcaaattcatcacct 150  Q
    ||||| ||||||| |||||||| |||||||||||||||||||| |||||||    
T  40918090 atcatttaactcataatcaaaactaacactcatttatcaaatttatcacct 40918040  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 23638783 - 23638879
Alignment:
Q  99 catcatataactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaactcaattcaaa 195  Q
    |||||| ||| ||| |||||||| |||||||||||| ||||||||||||||||||||||| ||| ||  || |||| ||  | ||||||||||||||    
T  23638783 catcatctaattcataatcaaaactaacactcatttgtcaaattcatcaccttcaaccactaattcagctcctctttaaacaaaaactcaattcaaa 23638879  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 1756603 - 1756659
Alignment:
Q  89 acatcatcatcatcatataactcacaatcaaaattaacactcatttatcaaattcat 145  Q
    |||||| || |||||| |||||||||||||||| |||||| ||||||| ||||||||    
T  1756603 acatcaccaccatcatctaactcacaatcaaaactaacacccatttattaaattcat 1756659  T

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Target: scaffold0081 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 42829 - 42762
Alignment:
Q  129 tcatttatcaaattcatcaccttcaaccacaaatc-caattcatcttcaactacaaactcaattcaaa 195  Q
    ||||||||||||||||||||||| ||||| |||||    |||||||||||| ||||||||||||||||    
T  42829 tcatttatcaaattcatcacctttaaccataaatcaggtttcatcttcaaccacaaactcaattcaaa 42762  T

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Target: scaffold0041 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 55005 - 55055
Alignment:
Q  100 atcatataactcacaatcaaaattaacactcatttatcaaattcatcacct 150  Q
    ||||| ||||||| |||||||| |||||||||||||||||||| |||||||    
T  55005 atcatttaactcataatcaaaactaacactcatttatcaaatttatcacct 55055  T

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