View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0754_low_38 (Length: 275)

Name: NF0754_low_38
Description: NF0754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0754_low_38
NF0754_low_38
[»] chr6 (12 HSPs)
chr6 (50-237)||(24933945-24934132)
chr6 (50-237)||(24941478-24941665)
chr6 (57-237)||(24739736-24739916)
chr6 (57-233)||(21161166-21161342)
chr6 (60-219)||(30153793-30153955)
chr6 (138-221)||(29954243-29954326)
chr6 (90-232)||(29950471-29950613)
chr6 (138-223)||(30131997-30132082)
chr6 (138-187)||(30134492-30134541)
chr6 (90-232)||(30148810-30148952)
chr6 (57-109)||(24711544-24711596)
chr6 (165-217)||(28927631-28927683)
[»] chr4 (1 HSPs)
chr4 (52-189)||(44263129-44263266)
[»] scaffold0014 (1 HSPs)
scaffold0014 (57-217)||(136672-136832)
[»] scaffold0177 (1 HSPs)
scaffold0177 (134-217)||(26652-26735)
[»] scaffold0110 (1 HSPs)
scaffold0110 (90-219)||(44443-44572)
[»] chr1 (1 HSPs)
chr1 (158-222)||(10129430-10129494)
[»] chr3 (1 HSPs)
chr3 (134-216)||(11990611-11990693)
[»] scaffold0308 (1 HSPs)
scaffold0308 (156-217)||(8293-8354)
[»] scaffold0019 (1 HSPs)
scaffold0019 (156-217)||(126763-126824)
[»] scaffold1840 (1 HSPs)
scaffold1840 (165-217)||(707-759)


Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 50 - 237
Target Start/End: Complemental strand, 24934132 - 24933945
Alignment:
Q  50 atcagaggcatcaattacaagtttatccttgcataaactatcaataattgtattgtacatgacggcatcagaccgaaccaacagcccatcaatctttcta 149  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||  ||| || | ||||||||||||||||||| ||||||    
T  24934132 atcagaggcatgaattacaagtttatccttgcacaaactatcaataattgtattgtacatgactacattaggctgaaccaacagcccatcaatttttcta 24934033  T
Q  150 agaacctgcagggcagctcttgtttctcctgttttacatagtccattgatcaaggtcccataactaacctgatcaaggtgaaacccct 237  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24934032 agaacctgcagggcagctcttgtttctcctgttttacataatccattgatcaaggtcccataactaacctgatcaaggtgaaacccct 24933945  T

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Target: chr6; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 50 - 237
Target Start/End: Complemental strand, 24941665 - 24941478
Alignment:
Q  50 atcagaggcatcaattacaagtttatccttgcataaactatcaataattgtattgtacatgacggcatcagaccgaaccaacagcccatcaatctttcta 149  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||  ||| || | |||||||||||||||||||  |||||    
T  24941665 atcagaggcatgaattacaagtttatccttgcacaaactatcaataattgtattgtacatgactacattaggctgaaccaacagcccatcaattcttcta 24941566  T
Q  150 agaacctgcagggcagctcttgtttctcctgttttacatagtccattgatcaaggtcccataactaacctgatcaaggtgaaacccct 237  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||| ||||||||||    
T  24941565 agaacctgcagggcagctcttgtttctcctgttttacataatccattgatcaaggtcccataactaacttgattaagatgaaacccct 24941478  T

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Target: chr6; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 57 - 237
Target Start/End: Original strand, 24739736 - 24739916
Alignment:
Q  57 gcatcaattacaagtttatccttgcataaactatcaataattgtattgtacatgacggcatcagaccgaaccaacagcccatcaatctttctaagaacct 156  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||  ||| || | ||||||||||||||||||| |||||||||||||    
T  24739736 gcatcaattacaagtttatccttgcataaactataaataattgtactgtacatgaccacattaggctgaaccaacagcccatcaatatttctaagaacct 24739835  T
Q  157 gcagggcagctcttgtttctcctgttttacatagtccattgatcaaggtcccataactaacctgatcaaggtgaaacccct 237  Q
    ||| |||||||||||||||||||| ||| ||||  ||||  |||||||||||||||||||| |||| ||| ||||||||||    
T  24739836 gcatggcagctcttgtttctcctgctttgcataacccatcaatcaaggtcccataactaacttgattaagttgaaacccct 24739916  T

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Target: chr6; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 57 - 233
Target Start/End: Original strand, 21161166 - 21161342
Alignment:
Q  57 gcatcaattacaagtttatccttgcataaactatcaataattgtattgtacatgacggcatcagaccgaaccaacagcccatcaatctttctaagaacct 156  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||  ||| || | ||||||||||||||||||| |||||||||||||    
T  21161166 gcatcaattacaagtttatccttgcataaactataaataattgtactgtacatgaccacattaggctgaaccaacagcccatcaatatttctaagaacct 21161265  T
Q  157 gcagggcagctcttgtttctcctgttttacatagtccattgatcaaggtcccataactaacctgatcaaggtgaaac 233  Q
    ||| |||||||||||||||||||| ||| ||||  ||||  |||||||||||||||||||| |||| ||| ||||||    
T  21161266 gcatggcagctcttgtttctcctgctttgcataacccatcaatcaaggtcccataactaacttgattaagttgaaac 21161342  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 60 - 219
Target Start/End: Complemental strand, 30153955 - 30153793
Alignment:
Q  60 tcaattacaagtttatccttgcataaactatcaataattgtattgtacatgacggcatcagaccgaaccaacag---cccatcaatctttctaagaacct 156  Q
    |||||||| ||||||||||| || ||||||||||| |||| | ||||||| | | ||||||  | |||||| |    ||| |||||||||||||| | ||    
T  30153955 tcaattacgagtttatccttacagaaactatcaatgattgcagtgtacattatgacatcaggtctaaccaataataacccttcaatctttctaagcaact 30153856  T
Q  157 gcagggcagctcttgtttctcctgttttacatagtccattgatcaaggtcccataactaacct 219  Q
    |||||||||||||||||||||| | ||||||||  || |||||||| ||||||||||||||||    
T  30153855 gcagggcagctcttgtttctccggatttacataacccgttgatcaatgtcccataactaacct 30153793  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 29954243 - 29954326
Alignment:
Q  138 tcaatctttctaagaacctgcagggcagctcttgtttctcctgttttacatagtccattgatcaaggtcccataactaacctga 221  Q
    ||||||||||||||||||| || ||||||||| ||||||||| |||||||||  || || |||| ||| |||||||||||||||    
T  29954243 tcaatctttctaagaacctacaaggcagctctagtttctcctattttacataacccgtttatcagggtaccataactaacctga 29954326  T

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Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 232
Target Start/End: Original strand, 29950471 - 29950613
Alignment:
Q  90 tcaataattgtattgtacatgacggcatcagaccgaaccaacagcccatcaatctttctaagaacctgcagggcagctcttgtttctcctgttttacata 189  Q
    ||||| ||||| |||||||| ||| |||||| |  |||||||| ||| | |||||||  ||| | ||| ||||||||| |||||||||| | ||||||||    
T  29950471 tcaatgattgtgttgtacataacgacatcaggcttaaccaacaaccctttaatcttttcaagcaactgtagggcagcttttgtttctccggatttacata 29950570  T
Q  190 gtccattgatcaaggtcccataactaacctgatcaaggtgaaa 232  Q
      || ||||||||| ||||||||||||| |||| ||| |||||    
T  29950571 acccgttgatcaagatcccataactaacatgattaagatgaaa 29950613  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 30132082 - 30131997
Alignment:
Q  138 tcaatctttctaagaacctgcagggcagctcttgtttctcctgttttacatagtccattgatcaaggtcccataactaacctgatc 223  Q
    |||||||||  |||||||||||||||||||||||||||||| | ||||||||  || ||||| | ||| ||||||||||| |||||    
T  30132082 tcaatcttttcaagaacctgcagggcagctcttgtttctcccgatttacataacccgttgataagggttccataactaacatgatc 30131997  T

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Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 30134541 - 30134492
Alignment:
Q  138 tcaatctttctaagaacctgcagggcagctcttgtttctcctgttttaca 187  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  30134541 tcaatctttcgaagaacctgcagggcagctcttgtttctcccgttttaca 30134492  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 232
Target Start/End: Complemental strand, 30148952 - 30148810
Alignment:
Q  90 tcaataattgtattgtacatgacggcatcagaccgaaccaacagcccatcaatctttctaagaacctgcagggcagctcttgtttctcctgttttacata 189  Q
    ||||| ||||| |||||||| ||| |||||| |  |||||| | ||| | |||||||  ||| | ||| ||||||||| |||||||||| | ||||||||    
T  30148952 tcaatgattgtgttgtacataacgacatcaggcttaaccaaaaaccctttaatcttttcaagcaactgtagggcagcttttgtttctccggatttacata 30148853  T
Q  190 gtccattgatcaaggtcccataactaacctgatcaaggtgaaa 232  Q
      || ||||||||| ||||||||||||| |||| ||| |||||    
T  30148852 acccgttgatcaagatcccataactaacatgattaagatgaaa 30148810  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 24711596 - 24711544
Alignment:
Q  57 gcatcaattacaagtttatccttgcataaactatcaataattgtattgtacat 109  Q
    |||||| | ||||||||||  |||||||||||||||||||||||  |||||||    
T  24711596 gcatcattaacaagtttatatttgcataaactatcaataattgtggtgtacat 24711544  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 28927631 - 28927683
Alignment:
Q  165 gctcttgtttctcctgttttacatagtccattgatcaaggtcccataactaac 217  Q
    |||||||||| |||   |||||||| ||| |||||||||||||||||||||||    
T  28927631 gctcttgtttgtccaactttacataatccgttgatcaaggtcccataactaac 28927683  T

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Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 52 - 189
Target Start/End: Original strand, 44263129 - 44263266
Alignment:
Q  52 cagaggcatcaattacaagtttatccttgcataaactatcaataattgtattgtacatgacggcatcagaccgaaccaacagcccatcaatctttctaag 151  Q
    ||||||||||||||| ||||||||  ||||| ||||||| |||||||||||||||||||||  ||| || |||||||||| |||||||||||||||||||    
T  44263129 cagaggcatcaattataagtttatttttgcacaaactatgaataattgtattgtacatgaccacattaggccgaaccaacggcccatcaatctttctaag 44263228  T
Q  152 aacctgcagggcagctcttgtttctcctgttttacata 189  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  44263229 aacctgcagggcagctcttgtttctccagatttacata 44263266  T

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Target: scaffold0014 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 217
Target Start/End: Complemental strand, 136832 - 136672
Alignment:
Q  57 gcatcaattacaagtttatccttgcataaactatcaataattgtattgtacatgacggcatcagaccgaaccaacagcccatcaatctttctaagaacct 156  Q
    |||||||||||||||||||| || || ||||||||||||||| |  | ||||| ||  |||| |     |||||   ||||||||||||||| |  || |    
T  136832 gcatcaattacaagtttatctttacacaaactatcaataattatgctatacattaccacatcggtgttgaccaatttcccatcaatctttctcaacactt 136733  T
Q  157 gcagggcagctcttgtttctcctgttttacatagtccattgatcaaggtcccataactaac 217  Q
    ||| ||||||||||||||||||  ||||||| | |||||||||||||||| ||||| ||||    
T  136732 gcaaggcagctcttgtttctcccattttacacaatccattgatcaaggtcgcataagtaac 136672  T

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Target: scaffold0177 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 26735 - 26652
Alignment:
Q  134 cccatcaatctttctaagaacctgcagggcagctcttgtttctcctgttttacatagtccattgatcaaggtcccataactaac 217  Q
    ||||||||||||||| |  || |||| ||||||||||||||||||  ||||||| | ||||||||||||| ||||||| |||||    
T  26735 cccatcaatctttctcaacacttgcaaggcagctcttgtttctcccattttacacaatccattgatcaagatcccatagctaac 26652  T

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Target: scaffold0110 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 219
Target Start/End: Original strand, 44443 - 44572
Alignment:
Q  90 tcaataattgtattgtacatgacggcatcagaccgaaccaacagcccatcaatctttctaagaacctgcagggcagctcttgtttctcctgttttacata 189  Q
    ||||| ||||| |||||||| ||| |||||| |  |||||||   || |||||||||||||| | |  ||  |||||| | ||||| || | ||||||||    
T  44443 tcaatgattgtgttgtacataacgacatcaggcttaaccaacgagccttcaatctttctaagcaacgacaatgcagctttagtttcaccggatttacata 44542  T
Q  190 gtccattgatcaaggtcccataactaacct 219  Q
     ||| |||||||||||||||||||||||||    
T  44543 atccgttgatcaaggtcccataactaacct 44572  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 10129494 - 10129430
Alignment:
Q  158 cagggcagctcttgtttctcctgttttacatagtccattgatcaaggtcccataactaacctgat 222  Q
    |||||||||||||||||||||   |||||| | |||||| |||||||  ||||||||||||||||    
T  10129494 cagggcagctcttgtttctccaactttacacaatccattaatcaaggctccataactaacctgat 10129430  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 216
Target Start/End: Complemental strand, 11990693 - 11990611
Alignment:
Q  134 cccatcaatctttctaagaacctgcagggcagctcttgtttctcctgttttacatagtccattgatcaaggtcccataactaa 216  Q
    ||||||||||||||| || |  |||| ||| | ||||||||| ||| ||||||| |  |||||||||||||||||||| ||||    
T  11990693 cccatcaatctttctcagcatttgcaaggctgttcttgtttcccctattttacacaagccattgatcaaggtcccatagctaa 11990611  T

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Target: scaffold0308 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 8354 - 8293
Alignment:
Q  156 tgcagggcagctcttgtttctcctgttttacatagtccattgatcaaggtcccataactaac 217  Q
    |||| ||| ||||||||||| ||| ||||||| |  |||||||||||||||||||| |||||    
T  8354 tgcaaggctgctcttgtttcccctattttacacaagccattgatcaaggtcccatagctaac 8293  T

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Target: scaffold0019 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 126763 - 126824
Alignment:
Q  156 tgcagggcagctcttgtttctcctgttttacatagtccattgatcaaggtcccataactaac 217  Q
    |||| ||| ||||||||||| ||| ||||||| |  |||||||||||||||||||| |||||    
T  126763 tgcaaggctgctcttgtttcccctattttacacaagccattgatcaaggtcccatagctaac 126824  T

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Target: scaffold1840 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1840
Description:

Target: scaffold1840; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 759 - 707
Alignment:
Q  165 gctcttgtttctcctgttttacatagtccattgatcaaggtcccataactaac 217  Q
    ||||||||||| ||| ||||||| | |||||||||||||||||| || |||||    
T  759 gctcttgtttcccctattttacacaatccattgatcaaggtcccgtagctaac 707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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