View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0754_low_45 (Length: 258)
Name: NF0754_low_45
Description: NF0754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0754_low_45 |
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| [»] chr5 (3 HSPs) |
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| [»] chr4 (4 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 29 - 258
Target Start/End: Original strand, 15169293 - 15169520
Alignment:
| Q |
29 |
gtgtgtagtgatgaaagatgtaagttttatcttcnnnnnnnnngttcccttaatgtttgcttgttttctacaatgatattttttgaaagaaaacttttta |
128 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
15169293 |
gtgtgtagtgatgaaagatgtaagttttatcttctttttttt--tccccttaatgtatgcttgttttctacaatgatattttttgaaagagagcttttta |
15169390 |
T |
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| Q |
129 |
ctaacctgataatgtatttactttaattatgcagtttgaatgtgcgtacaagatggttaatgaattgcagaaaaagtattacaaatacaaaacaaccatg |
228 |
Q |
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| T |
15169391 |
ctaacctgataatgtatttactttaattatgcagtttgaatgtgcgtacaagatggttaatgaattgcagaaaaagtattacaaatacaaaacaaccatg |
15169490 |
T |
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| Q |
229 |
tataatgccattatggcaagatattttttc |
258 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
15169491 |
tataatgccattatggcaagatattttttc |
15169520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 77 - 258
Target Start/End: Original strand, 15165072 - 15165253
Alignment:
| Q |
77 |
cttaatgtttgcttgttttctacaatgatattttttgaaagaaaactttttactaacctgataatgtatttactttaattatgcagtttgaatgtgcgta |
176 |
Q |
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|||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||| ||| || |
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| T |
15165072 |
cttaatgtatgcttgttttctacaatgatatcttttgaaagaaagctttttactaacctagtaatgtatttactttcattatgcagtttgaatctgcata |
15165171 |
T |
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| Q |
177 |
caagatggttaatgaattgcagaaaaagtattacaaatacaaaacaaccatgtataatgccattatggcaagatattttttc |
258 |
Q |
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| T |
15165172 |
caagatggttaatgaattgcaagaaaagtatttcaaatacaaaacaacaatgtataatgctattatggcaggatattttttc |
15165253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 15174130 - 15174194
Alignment:
| Q |
77 |
cttaatgtttgcttgttttctacaatgatattttttgaaagaaaactttttactaacctgataat |
141 |
Q |
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| T |
15174130 |
cttaatttatgcttgttttctactatgatatcttttaaaagaaaatggtttactaacctgataat |
15174194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 77 - 258
Target Start/End: Complemental strand, 55805288 - 55805107
Alignment:
| Q |
77 |
cttaatgtttgcttgttttctacaatgatattttttgaaagaaaactttttactaacctgataatgtatttactttaattatgcagtttgaatgtgcgta |
176 |
Q |
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|||||||| ||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
55805288 |
cttaatgtatgcttgttttctacaataatatcctttgaaagaaagctttttactaacctgataatgtatttactttcattatgcagtttgaatgtgcgta |
55805189 |
T |
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| Q |
177 |
caagatggttaatgaattgcagaaaaagtattacaaatacaaaacaaccatgtataatgccattatggcaagatattttttc |
258 |
Q |
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| T |
55805188 |
caagatggttaatgaattgcagaaaaagtatttcaaatacaaaacaaccatgtataatgccattatggcaggatattttttc |
55805107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 55809001 - 55808925
Alignment:
| Q |
182 |
tggttaatgaattgcagaaaaagtattacaaatacaaaacaaccatgtataatgccattatggcaagatattttttc |
258 |
Q |
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| T |
55809001 |
tggttaatgaattgcagaaaaagtatttcaaatacaaaacaaccatgtataatgccattatggcaggatattttttc |
55808925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 197
Target Start/End: Original strand, 31463483 - 31463590
Alignment:
| Q |
90 |
tgttttctacaatgatattttttgaaagaaaactttttactaacctgataatgtatttactttaattatgcagtttgaatgtgcgtacaagatggttaat |
189 |
Q |
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|||||||||||||| ||| ||||||| |||| || || ||||| ||| |||||||||||| || |||||||||||| |||| ||||||||||||||| |
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| T |
31463483 |
tgttttctacaatgctatcttttgaaggaaagctcttcactaaatgaatattgtatttactttcataatgcagtttgaacgtgcatacaagatggttaat |
31463582 |
T |
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| Q |
190 |
gaattgca |
197 |
Q |
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|||||||| |
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| T |
31463583 |
gaattgca |
31463590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 31450305 - 31450350
Alignment:
| Q |
157 |
atgcagtttgaatgtgcgtacaagatggttaatgaattgcagaaaa |
202 |
Q |
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| T |
31450305 |
atgcagtttgtacgtgcatacatgatggttaatgaattgcagaaaa |
31450350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 77 - 258
Target Start/End: Original strand, 29710375 - 29710557
Alignment:
| Q |
77 |
cttaatgtttgcttgttttctacaatgatattttttgaaagaaaactttttactaacc-tgataatgtatttactttaattatgcagtttgaatgtgcgt |
175 |
Q |
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|||||||| ||||||||||| ||||| |||| |||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
29710375 |
cttaatgtatgcttgttttcaacaataatatcttttgaaagaaagctttttactaaccctgataatgtatttactttcattatgcagtttgaatgtgcgt |
29710474 |
T |
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| Q |
176 |
acaagatggttaatgaattgcagaaaaagtattacaaatacaaaacaaccatgtataatgccattatggcaagatattttttc |
258 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29710475 |
acaagatggttaatgaattgcagaaaaagtatttcaaatacaaaacaaccatgtataatgccattatggcaggatattttttc |
29710557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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