View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0754_low_52 (Length: 247)

Name: NF0754_low_52
Description: NF0754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0754_low_52
NF0754_low_52
[»] chr6 (3 HSPs)
chr6 (22-247)||(6328412-6328637)
chr6 (22-247)||(6335970-6336195)
chr6 (22-247)||(6350955-6351180)


Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 6328412 - 6328637
Alignment:
Q  22 catcatcaacaccaaaaacaagcatgccacgtaagccagcttcattaacagcccttatactctttccagcagtaatagcatcttctccagcacaaaaatg 121  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6328412 catcttcaacaccaaaaacaagcatgccacgtaagccagcttcattaacagaccttatactctttccagcagtaatagcatcttctccagcacaaaaatg 6328511  T
Q  122 ttcatagaatgttctctttgtaactgccataactgcatctttcaatattcccgtttgtaacaattttgattgcatagcccatattccaacgtccacgaca 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6328512 ttcatagaatgttctctttgtaactgccataactgcatctttcaagattcccgtttgtaacaattttgattgcatagcccatattccaacgtccacgaca 6328611  T
Q  222 ggtcctatagccgttgcatgcagaac 247  Q
    ||||||||||||||||||||||||||    
T  6328612 ggtcctatagccgttgcatgcagaac 6328637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 6335970 - 6336195
Alignment:
Q  22 catcatcaacaccaaaaacaagcatgccacgtaagccagcttcattaacagcccttatactctttccagcagtaatagcatcttctccagcacaaaaatg 121  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6335970 catcttcaacaccaaaaacaagcatgccacgtaagccagcttcattaacagaccttatactctttccagcagtaatagcatcttctccagcacaaaaatg 6336069  T
Q  122 ttcatagaatgttctctttgtaactgccataactgcatctttcaatattcccgtttgtaacaattttgattgcatagcccatattccaacgtccacgaca 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6336070 ttcatagaatgttctctttgtaactgccataactgcatctttcaagattcccgtttgtaacaattttgattgcatagcccatattccaacgtccacgaca 6336169  T
Q  222 ggtcctatagccgttgcatgcagaac 247  Q
    ||||||||||||||||||||||||||    
T  6336170 ggtcctatagccgttgcatgcagaac 6336195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 6350955 - 6351180
Alignment:
Q  22 catcatcaacaccaaaaacaagcatgccacgtaagccagcttcattaacagcccttatactctttccagcagtaatagcatcttctccagcacaaaaatg 121  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350955 catcttcaacaccaaaaacaagcatgccacgtaagccagcttcattaacagaccttatactctttccagcagtaatagcatcttctccagcacaaaaatg 6351054  T
Q  122 ttcatagaatgttctctttgtaactgccataactgcatctttcaatattcccgtttgtaacaattttgattgcatagcccatattccaacgtccacgaca 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6351055 ttcatagaatgttctctttgtaactgccataactgcatctttcaatattcccgtttgtaacaattttgattgcatagcccatattccaacgtccactaca 6351154  T
Q  222 ggtcctatagccgttgcatgcagaac 247  Q
    ||||||||||||||||||||||||||    
T  6351155 ggtcctatagccgttgcatgcagaac 6351180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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