View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0754_low_61 (Length: 206)

Name: NF0754_low_61
Description: NF0754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0754_low_61
NF0754_low_61
[»] scaffold0091 (3 HSPs)
scaffold0091 (129-206)||(29057-29134)
scaffold0091 (8-66)||(28934-28994)
scaffold0091 (8-53)||(24737-24782)
[»] chr6 (4 HSPs)
chr6 (129-206)||(14989413-14989490)
chr6 (131-206)||(14980301-14980376)
chr6 (8-53)||(14980460-14980505)
chr6 (129-166)||(10906902-10906939)
[»] chr1 (5 HSPs)
chr1 (129-206)||(13882274-13882351)
chr1 (129-206)||(51658700-51658777)
chr1 (144-197)||(1567113-1567166)
chr1 (8-53)||(13882464-13882509)
chr1 (8-52)||(51658854-51658898)
[»] scaffold0218 (2 HSPs)
scaffold0218 (130-206)||(14378-14454)
scaffold0218 (8-61)||(14254-14307)
[»] scaffold0003 (2 HSPs)
scaffold0003 (129-204)||(130795-130870)
scaffold0003 (8-53)||(130650-130695)
[»] chr3 (9 HSPs)
chr3 (132-206)||(16642300-16642374)
chr3 (131-206)||(4712838-4712913)
chr3 (129-206)||(14055075-14055152)
chr3 (129-206)||(14062816-14062893)
chr3 (133-197)||(13926896-13926960)
chr3 (8-53)||(16642150-16642195)
chr3 (9-53)||(4712997-4713041)
chr3 (8-53)||(14062983-14063028)
chr3 (8-53)||(14055222-14055267)
[»] chr7 (11 HSPs)
chr7 (129-206)||(16060512-16060589)
chr7 (129-206)||(48376787-48376864)
chr7 (8-66)||(16060391-16060449)
chr7 (129-197)||(4531797-4531865)
chr7 (8-53)||(9080223-9080268)
chr7 (129-166)||(9080338-9080375)
chr7 (8-46)||(48376654-48376692)
chr7 (8-48)||(16069010-16069050)
chr7 (144-190)||(37945878-37945924)
chr7 (129-161)||(37946032-37946064)
chr7 (8-48)||(41744135-41744175)
[»] chr8 (4 HSPs)
chr8 (129-192)||(23657751-23657814)
chr8 (129-206)||(23658526-23658611)
chr8 (8-50)||(23657665-23657707)
chr8 (8-50)||(23658440-23658482)
[»] scaffold0063 (2 HSPs)
scaffold0063 (8-66)||(28443-28501)
scaffold0063 (129-167)||(28342-28380)
[»] scaffold1269 (1 HSPs)
scaffold1269 (152-206)||(1-55)
[»] chr2 (1 HSPs)
chr2 (129-197)||(23656508-23656576)
[»] scaffold0061 (1 HSPs)
scaffold0061 (8-53)||(18099-18144)
[»] scaffold0319 (1 HSPs)
scaffold0319 (175-206)||(13608-13639)
[»] scaffold1043 (1 HSPs)
scaffold1043 (8-48)||(1427-1467)
[»] chr5 (2 HSPs)
chr5 (8-48)||(25756783-25756823)
chr5 (8-48)||(25790978-25791018)


Alignment Details
Target: scaffold0091 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 29057 - 29134
Alignment:
Q  129 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29057 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 29134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 28934 - 28994
Alignment:
Q  8 catcatcataattatacgtcgtcattctcatagtca--atatatatatttacacaccaccc 66  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  28934 catcatcataattatacgtcgtcattctcatagtcaatatatatatatttacacaccaccc 28994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 24737 - 24782
Alignment:
Q  8 catcatcataattatacgtcgtcattctcatagtcaatatatatat 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  24737 catcatcataattatacgtcgtcattctcatagtcaatatatatat 24782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 14989490 - 14989413
Alignment:
Q  129 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14989490 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 14989413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 14980376 - 14980301
Alignment:
Q  131 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14980376 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatc 14980301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 14980505 - 14980460
Alignment:
Q  8 catcatcataattatacgtcgtcattctcatagtcaatatatatat 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  14980505 catcatcataattatacgtcgtcattctcatagtcaatatatatat 14980460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 10906939 - 10906902
Alignment:
Q  129 ctcatcatcactaacatataaacattatcatttctcat 166  Q
    |||||||||||||| |||||||||||||||||||||||    
T  10906939 ctcatcatcactaaaatataaacattatcatttctcat 10906902  T

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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 13882351 - 13882274
Alignment:
Q  129 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13882351 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 13882274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 51658777 - 51658700
Alignment:
Q  129 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 206  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51658777 ctcatcatcactaacatataaatattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 51658700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 1567166 - 1567113
Alignment:
Q  144 atataaacattatcatttctcatcgtatttatttaattacatatatataatatc 197  Q
    ||||||| ||| ||||||||||||||||||||||  ||||||||||||||||||    
T  1567166 atataaatattgtcatttctcatcgtatttatttgtttacatatatataatatc 1567113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 13882509 - 13882464
Alignment:
Q  8 catcatcataattatacgtcgtcattctcatagtcaatatatatat 53  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||    
T  13882509 catcatcataattatacgtcgtcattctcattgtctatatatatat 13882464  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 51658898 - 51658854
Alignment:
Q  8 catcatcataattatacgtcgtcattctcatagtcaatatatata 52  Q
    |||||||||||||||||||| |||||||||| |||||||||||||    
T  51658898 catcatcataattatacgtcatcattctcatcgtcaatatatata 51658854  T

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Target: scaffold0218 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 14378 - 14454
Alignment:
Q  130 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14378 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 14454  T

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Target: scaffold0218; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 14254 - 14307
Alignment:
Q  8 catcatcataattatacgtcgtcattctcatagtcaatatatatatttacacac 61  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  14254 catcatcataattatacgtcatcattgtcatagtcaatatatatatatacacac 14307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 129 - 204
Target Start/End: Original strand, 130795 - 130870
Alignment:
Q  129 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtca 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  130795 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtca 130870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 130650 - 130695
Alignment:
Q  8 catcatcataattatacgtcgtcattctcatagtcaatatatatat 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  130650 catcatcataattatacgtcgtcattctcatagtcaatatatatat 130695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 16642300 - 16642374
Alignment:
Q  132 atcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16642300 atcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 16642374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 4712913 - 4712838
Alignment:
Q  131 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4712913 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatc 4712838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 14055152 - 14055075
Alignment:
Q  129 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 206  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14055152 ctcattatcactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatc 14055075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 14062893 - 14062816
Alignment:
Q  129 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 206  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14062893 ctcatcataactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatc 14062816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 13926960 - 13926896
Alignment:
Q  133 tcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatc 197  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  13926960 tcatcactaaaatataaacattatcatttctcatcgtatttatttatttaaatatatataatatc 13926896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 16642150 - 16642195
Alignment:
Q  8 catcatcataattatacgtcgtcattctcatagtcaatatatatat 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  16642150 catcatcataattatacgtcgtcattctcatagtcaatatatatat 16642195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 4713041 - 4712997
Alignment:
Q  9 atcatcataattatacgtcgtcattctcatagtcaatatatatat 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  4713041 atcatcataattatacgtcgtcattctcatagtcaatatatatat 4712997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 14063028 - 14062983
Alignment:
Q  8 catcatcataattatacgtcgtcattctcatagtcaatatatatat 53  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||    
T  14063028 catcatcataattatacgtcatcattctcatcgtcaatatatatat 14062983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 14055267 - 14055222
Alignment:
Q  8 catcatcataattatacgtcgtcattctcatagtcaatatatatat 53  Q
    |||||||||||||||||||| ||||| |||| ||||||||||||||    
T  14055267 catcatcataattatacgtcatcattatcatcgtcaatatatatat 14055222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 16060512 - 16060589
Alignment:
Q  129 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 206  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16060512 ctcatcatcactaacatataaacattatcatttctcatcatatttatttaattacatatatataatatcttcgtcatc 16060589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 48376787 - 48376864
Alignment:
Q  129 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 206  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48376787 ctcatcatcaataacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 48376864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 16060391 - 16060449
Alignment:
Q  8 catcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16060391 catcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 16060449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 4531865 - 4531797
Alignment:
Q  129 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatc 197  Q
    |||||||||| ||| |||||| |||||| ||||||||| ||||||||||| ||||||||||||||||||    
T  4531865 ctcatcatcaataaaatataagcattattatttctcattgtatttatttatttacatatatataatatc 4531797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 9080223 - 9080268
Alignment:
Q  8 catcatcataattatacgtcgtcattctcatagtcaatatatatat 53  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||    
T  9080223 catcatcataattatacgtcatcattctcatcgtcaatatatatat 9080268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 9080338 - 9080375
Alignment:
Q  129 ctcatcatcactaacatataaacattatcatttctcat 166  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9080338 ctcatcatcactaacatataaacattatcatttctcat 9080375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 48376654 - 48376692
Alignment:
Q  8 catcatcataattatacgtcgtcattctcatagtcaata 46  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  48376654 catcatcataattatacgtcatcattctcatagtcaata 48376692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 16069050 - 16069010
Alignment:
Q  8 catcatcataattatacgtcgtcattctcatagtcaatata 48  Q
    |||||||||||||||||||| |||||||||| |||||||||    
T  16069050 catcatcataattatacgtcatcattctcatcgtcaatata 16069010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 190
Target Start/End: Complemental strand, 37945924 - 37945878
Alignment:
Q  144 atataaacattatcatttctcatcgtatttatttaattacatatata 190  Q
    ||||||||||  |||||||| |||||||||||||| |||||||||||    
T  37945924 atataaacatcgtcatttcttatcgtatttatttatttacatatata 37945878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 37946064 - 37946032
Alignment:
Q  129 ctcatcatcactaacatataaacattatcattt 161  Q
    |||||||||||||| ||||||||||||||||||    
T  37946064 ctcatcatcactaaaatataaacattatcattt 37946032  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 41744135 - 41744175
Alignment:
Q  8 catcatcataattatacgtcgtcattctcatagtcaatata 48  Q
    |||||||||||||| ||||||||||||||||  ||||||||    
T  41744135 catcatcataattagacgtcgtcattctcatcatcaatata 41744175  T

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Target: chr8 (Bit Score: 60; Significance: 9e-26; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 23657751 - 23657814
Alignment:
Q  129 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 192  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23657751 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacatatatata 23657814  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 23658526 - 23658611
Alignment:
Q  129 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattac--------atatatataatatcttcgtcatc 206  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||||||||||||||||||    
T  23658526 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacacacacatatatatataatatcttcgtcatc 23658611  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 23657665 - 23657707
Alignment:
Q  8 catcatcataattatacgtcgtcattctcatagtcaatatata 50  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  23657665 catcatcataattatacgtcgtcattctcatagtctatatata 23657707  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 23658440 - 23658482
Alignment:
Q  8 catcatcataattatacgtcgtcattctcatagtcaatatata 50  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  23658440 catcatcataattataagtcgtcattctcatagtctatatata 23658482  T

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Target: scaffold0063 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 28501 - 28443
Alignment:
Q  8 catcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28501 catcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 28443  T

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Target: scaffold0063; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 129 - 167
Target Start/End: Complemental strand, 28380 - 28342
Alignment:
Q  129 ctcatcatcactaacatataaacattatcatttctcatc 167  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  28380 ctcatcatcactaacatataaacatcatcatttctcatc 28342  T

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Target: scaffold1269 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 1 - 55
Alignment:
Q  152 attatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 206  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1 attatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatc 55  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 23656576 - 23656508
Alignment:
Q  129 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatc 197  Q
    ||||| |||| ||| ||||||| ||||||||||||||| ||||||||||| || |||||||||||||||    
T  23656576 ctcattatcattaaaatataaatattatcatttctcattgtatttatttactttcatatatataatatc 23656508  T

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Target: scaffold0061 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 18144 - 18099
Alignment:
Q  8 catcatcataattatacgtcgtcattctcatagtcaatatatatat 53  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||    
T  18144 catcatcataatcatacttcgtcattctcatagtcaatatatatat 18099  T

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Target: scaffold0319 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 175 - 206
Target Start/End: Complemental strand, 13639 - 13608
Alignment:
Q  175 tttaattacatatatataatatcttcgtcatc 206  Q
    ||||||||||||||||||||||||||||||||    
T  13639 tttaattacatatatataatatcttcgtcatc 13608  T

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Target: scaffold1043 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 1467 - 1427
Alignment:
Q  8 catcatcataattatacgtcgtcattctcatagtcaatata 48  Q
    |||||||||||||||||||  |||||||||| |||||||||    
T  1467 catcatcataattatacgttatcattctcatcgtcaatata 1427  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 25756823 - 25756783
Alignment:
Q  8 catcatcataattatacgtcgtcattctcatagtcaatata 48  Q
    |||||||||||||||| ||| |||||||||| |||||||||    
T  25756823 catcatcataattataagtcatcattctcatcgtcaatata 25756783  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 25790978 - 25791018
Alignment:
Q  8 catcatcataattatacgtcgtcattctcatagtcaatata 48  Q
    |||||||||||||||| ||| |||||||||| |||||||||    
T  25790978 catcatcataattataagtcatcattctcatcgtcaatata 25791018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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