View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0754_low_7 (Length: 435)
Name: NF0754_low_7
Description: NF0754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0754_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 31 - 411
Target Start/End: Original strand, 15169588 - 15169969
Alignment:
| Q |
31 |
ttcattcattaaaa-atatatttaattgagtgtatgaaatctatataaaatagttcttccatattctcacttttttcgatattgtagaaaaacatcagtg |
129 |
Q |
| |
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|||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
15169588 |
ttcattcattaaaaaatatatttaaatgagtgtatgaaatctatttaaaatagttctttcatattctcacttttttcgatattgtagaaaaacatcattg |
15169687 |
T |
|
| Q |
130 |
gtgggttgagggttctcaaacaaatgcgagatgccaacataaagctcgattcatacactttcagctatttgattggcaattgtgaaacaaaagaagagat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15169688 |
gtgggttgagggttctcaaacaaatgcgagatgccaacataaagctcgattcatacactttcagctatttgattggcaattgtgaaacaaaagaagagat |
15169787 |
T |
|
| Q |
230 |
taaaaaagtaagttgagtttaataatttcatatatacaagtttgggggcctctgagcgggtttttggtccgattcctggtttcatgtgtcttatatctct |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15169788 |
taaaaaagtaagttgagtttaataatttcatatatacaagtttgggggcctctgagcgggtttttggtccgattcctggtttcatgtgtcttatatctct |
15169887 |
T |
|
| Q |
330 |
ggtggagcttgcttggtccattcttcgtttgttttgggcactatgagggagggagatttcttgtgttgttgtttttgtgatg |
411 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15169888 |
ggtggagtttgcttggtccattcttcgtttgttttgggcactatgagggagggagatttcttgtgttgttgtttttgtgatg |
15169969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 29 - 399
Target Start/End: Original strand, 15165319 - 15165690
Alignment:
| Q |
29 |
acttcattcattaaaaatatatttaattgagtgtatgaaatctatataaaatagttcttccatattctcacttttttcgatattgtagaaaaacatcagt |
128 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
15165319 |
acttcattcattaaaaatatatttaattgagtgtatgaaatctatataaaatagttcttccatattctcactttt-tcgatattgtagaaaaacatcagt |
15165417 |
T |
|
| Q |
129 |
ggtgggttgagggttctcaaacaaatgcgagatgccaacataaagctcgattcatacactttcagctatttgattggcaattgtgaaacaaaagaagaga |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
15165418 |
ggtgggttgagggttctcaaacaaatgcgagatgccaacataaagctcgattcatacactttcagctatttgattggcaattgtgcaacaaaagaagaga |
15165517 |
T |
|
| Q |
229 |
ttaaaaaagtaagttgagtttaataatttcatatatacaagtttgggggcctctgagcggg--tttttggtccgattcctggtttcatgtgtcttatatc |
326 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||| ||||||||||||||| |||||||| |||||| || |||||||| ||||||||||||||| || |
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| T |
15165518 |
ttaaaaaagtacgatgagtttaataatttcatatattcaagtttgggggcctttgagcgggtttttttgatctgattcctgatttcatgtgtcttatctc |
15165617 |
T |
|
| Q |
327 |
tctggtggagcttgcttggtccattcttcgtttgttttgggcactatgagggagggagatttcttgtgttgtt |
399 |
Q |
| |
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||| |||||| | | |||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||| |
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|
| T |
15165618 |
tctagtggagttggtttggtccattcttcctttgttttgggtgctactagggagggagatttcttgtgttgtt |
15165690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 255
Target Start/End: Original strand, 25460211 - 25460246
Alignment:
| Q |
220 |
aagaagagattaaaaaagtaagttgagtttaataat |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
25460211 |
aagaagagattaaaaaagtaagttgagtttaataat |
25460246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 31 - 411
Target Start/End: Original strand, 29710626 - 29711010
Alignment:
| Q |
31 |
ttcattcattaaaa-atatatttaattgagtgtatgaaatctatataaaatagttcttccatattctcacttttttcgatattgtagaaaaacatcagtg |
129 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||| | || |
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|
| T |
29710626 |
ttcattcattaaaaaatatatttaaatgagtgtatgaaatctatttaaaatagttctttcatattctcacttttatcgatattgtagaaaaacaaaattg |
29710725 |
T |
|
| Q |
130 |
gtgggttgagggttctcaaacaaatgcgagatgccaacataaagctcgattcatacactttcagctatttgattggcaattgtgaaacaaaagaagagat |
229 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29710726 |
gtgggttgaaggttctcaaacaaatgcgagatgccaacataaagctcgattcatacactttcagctatttgattgaaaattgtgaaacaaaagaagagat |
29710825 |
T |
|
| Q |
230 |
taaaaaagtaagttgagtttaataatttcatatatacaagtt--tgggggcctctgagc-gggtttttggtccgattcctggtttcatgtgtcttatatc |
326 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||||| ||||||||| ||| | ||||||||||| ||| | ||| ||||||||||||||| || |
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| T |
29710826 |
taagaaagtaagttgagtttaataatttcatatattcaagtttgtgggggcctatgaacggggtttttggttcgactactgatttcatgtgtcttatctc |
29710925 |
T |
|
| Q |
327 |
tctggtggagcttgcttggtccattcttcgtttgttttgggcactatgagggagggagatttcttgtgttgttgtttttgtgatg |
411 |
Q |
| |
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|||||||| | | |||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
29710926 |
tctggtggggttggcttggtccattcttcatttgttttgggcaccatgagggatggagatttcttgtgttgttgtttttgtgatg |
29711010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 31 - 411
Target Start/End: Complemental strand, 55804833 - 55804449
Alignment:
| Q |
31 |
ttcattcattaaaaa-tatatttaattgagtgtatgaaatctatataaaatagttcttccatattctcacttttttcgatattgtagaaaaacatcagtg |
129 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||| | || |
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|
| T |
55804833 |
ttcattcattaaaaaatatatttaaatgagtgtatgaaatctatttaaaatagttctttcatattctcacttttatcgatattgtagaaaaacaaaattg |
55804734 |
T |
|
| Q |
130 |
gtgggttgagggttctcaaacaaatgcgagatgccaacataaagctcgattcatacactttcagctatttgattggcaattgtgaaacaaaagaagagat |
229 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
55804733 |
gtgggttggaggttctcaaacaaatgcgagatgccaacgtaaagctcgattcatacactttcagctatttgattgaaaattgtgaaacaaaagaagagat |
55804634 |
T |
|
| Q |
230 |
taaaaaagtaagttgagtttaataatttcatatatacaagtt--tgggggcctctgagc-gggtttttggtccgattcctggtttcatgtgtcttatatc |
326 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||| ||| ||||| ||||||||||||||| || |
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|
| T |
55804633 |
taagaaagtaagttgagtttaataatttcatatattcaagtttgtgggggcctctgaacggggtttttggttcgactcctgatttcatgtgtcttatctc |
55804534 |
T |
|
| Q |
327 |
tctggtggagcttgcttggtccattcttcgtttgttttgggcactatgagggagggagatttcttgtgttgttgtttttgtgatg |
411 |
Q |
| |
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|
| T |
55804533 |
tctggtggggttggcttggtccattcttcatttgttttgggcaccatgagggatggagatttcttgtgttgttgtttttgtgatg |
55804449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 75 - 264
Target Start/End: Original strand, 31464796 - 31464985
Alignment:
| Q |
75 |
taaaatagttcttccatattctcacttttttcgatattgtagaaaaacatcagtggtgggttgagggttctcaaacaaatgcgagatgccaacataaagc |
174 |
Q |
| |
|
||||||| ||| | ||| ||||||| |||| ||| ||||||||||||||||||||||| || ||||| |||||||| |||| ||| ||||| |||||| |
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|
| T |
31464796 |
taaaataattcattcattttctcaccttttccgaaattgtagaaaaacatcagtggtgccttaagggtcctcaaacacatgcaagaggccaatgtaaagc |
31464895 |
T |
|
| Q |
175 |
tcgattcatacactttcagctatttgattggcaattgtgaaacaaaagaagagattaaaaaagtaagttgagtttaataatttcatatat |
264 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||| || || || | |||||||||||||||||||| ||||||| |
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|
| T |
31464896 |
ctgattcacagactttcagctatttgattggcaattgtgaaacaaaagatgatataaatatggtaagttgagtttaataattccatatat |
31464985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 93 - 264
Target Start/End: Original strand, 31451723 - 31451894
Alignment:
| Q |
93 |
ttctcacttttttcgatattgtagaaaaacatcagtggtgggttgagggttctcaaacaaatgcgagatgccaacataaagctcgattcatacactttca |
192 |
Q |
| |
|
||||||| |||| ||| | |||||||| | |||||||||| |||||||| ||||| | |||| |||||||||| ||| || |||||| | ||||| |
|
|
| T |
31451723 |
ttctcaccttttccgaaagtgtagaaaggcctcagtggtggattgagggtcatcaaaaacatgcaagatgccaacgtaatgcctgattcacagacttttc |
31451822 |
T |
|
| Q |
193 |
gctatttgattggcaattgtgaaacaaaagaagagattaaaaaagtaagttgagtttaataatttcatatat |
264 |
Q |
| |
|
|||||||| |||||| |||||||||| |||| || || || || |||||||||||| ||||||| ||||||| |
|
|
| T |
31451823 |
gctatttggttggcatttgtgaaacagaagacgatataaataaggtaagttgagttgaataattccatatat |
31451894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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