View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0755_high_12 (Length: 444)

Name: NF0755_high_12
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0755_high_12
NF0755_high_12
[»] chr6 (5 HSPs)
chr6 (1-145)||(14980606-14980750)
chr6 (367-444)||(14989413-14989490)
chr6 (219-291)||(14980460-14980532)
chr6 (369-444)||(14980301-14980376)
chr6 (367-404)||(10906902-10906939)
[»] scaffold0063 (3 HSPs)
scaffold0063 (1-145)||(28602-28746)
scaffold0063 (219-304)||(28443-28528)
scaffold0063 (367-405)||(28342-28380)
[»] scaffold0003 (3 HSPs)
scaffold0003 (1-145)||(130420-130564)
scaffold0003 (367-442)||(130795-130870)
scaffold0003 (219-291)||(130623-130695)
[»] chr8 (8 HSPs)
chr8 (1-145)||(23658210-23658354)
chr8 (1-123)||(17862398-17862520)
chr8 (219-288)||(23657638-23657707)
chr8 (219-288)||(23658413-23658482)
chr8 (367-430)||(23657751-23657814)
chr8 (93-145)||(23657512-23657564)
chr8 (367-444)||(23658526-23658611)
chr8 (219-286)||(17862246-17862313)
[»] chr3 (14 HSPs)
chr3 (1-145)||(4713140-4713284)
chr3 (1-145)||(14055368-14055512)
chr3 (1-133)||(16614137-16614269)
chr3 (1-145)||(14481926-14482070)
chr3 (370-444)||(16642300-16642374)
chr3 (219-291)||(16642123-16642195)
chr3 (369-444)||(4712838-4712913)
chr3 (367-444)||(14055075-14055152)
chr3 (367-444)||(14062816-14062893)
chr3 (219-291)||(4712997-4713069)
chr3 (225-291)||(14062983-14063049)
chr3 (219-291)||(14055222-14055294)
chr3 (371-435)||(13926896-13926960)
chr3 (219-270)||(14481800-14481851)
[»] chr7 (16 HSPs)
chr7 (1-144)||(16060146-16060289)
chr7 (1-145)||(48376424-48376568)
chr7 (1-145)||(9079978-9080122)
chr7 (13-126)||(16069171-16069284)
chr7 (219-304)||(16060364-16060449)
chr7 (367-444)||(16060512-16060589)
chr7 (367-444)||(48376787-48376864)
chr7 (219-291)||(9080196-9080268)
chr7 (219-284)||(48376627-48376692)
chr7 (219-286)||(16069010-16069077)
chr7 (367-435)||(4531797-4531865)
chr7 (42-145)||(6899608-6899711)
chr7 (367-404)||(9080338-9080375)
chr7 (382-428)||(37945878-37945924)
chr7 (245-286)||(41744134-41744175)
chr7 (367-399)||(37946032-37946064)
[»] scaffold0091 (5 HSPs)
scaffold0091 (4-145)||(28692-28833)
scaffold0091 (4-145)||(24495-24636)
scaffold0091 (367-444)||(29057-29134)
scaffold0091 (219-304)||(28907-28994)
scaffold0091 (219-291)||(24710-24782)
[»] scaffold0239 (1 HSPs)
scaffold0239 (1-145)||(21482-21626)
[»] scaffold0218 (3 HSPs)
scaffold0218 (1-145)||(14009-14153)
scaffold0218 (368-444)||(14378-14454)
scaffold0218 (219-299)||(14227-14307)
[»] scaffold0061 (2 HSPs)
scaffold0061 (1-145)||(18245-18389)
scaffold0061 (219-291)||(18099-18171)
[»] chr1 (7 HSPs)
chr1 (1-145)||(13882610-13882754)
chr1 (1-145)||(51658999-51659143)
chr1 (367-444)||(13882274-13882351)
chr1 (367-444)||(51658700-51658777)
chr1 (219-291)||(13882464-13882536)
chr1 (219-290)||(51658854-51658925)
chr1 (382-435)||(1567113-1567166)
[»] chr5 (4 HSPs)
chr5 (1-145)||(24832341-24832485)
chr5 (224-286)||(25756783-25756845)
chr5 (224-286)||(25790956-25791018)
chr5 (219-276)||(24832209-24832266)
[»] chr4 (3 HSPs)
chr4 (1-145)||(17418392-17418536)
chr4 (1-145)||(19728577-19728721)
chr4 (219-286)||(19728447-19728514)
[»] scaffold1043 (2 HSPs)
scaffold1043 (1-145)||(1557-1701)
scaffold1043 (219-286)||(1427-1494)
[»] scaffold0010 (1 HSPs)
scaffold0010 (4-143)||(142028-142167)
[»] scaffold0170 (1 HSPs)
scaffold0170 (3-145)||(17019-17164)
[»] chr2 (4 HSPs)
chr2 (3-145)||(23907557-23907702)
chr2 (1-145)||(23247367-23247511)
chr2 (367-435)||(23656508-23656576)
chr2 (1-68)||(22521465-22521533)
[»] scaffold1269 (1 HSPs)
scaffold1269 (390-444)||(1-55)
[»] scaffold0319 (1 HSPs)
scaffold0319 (413-444)||(13608-13639)


Alignment Details
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 14980750 - 14980606
Alignment:
Q  1 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  14980750 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgcatgcatgagacagactcttcaagtattaaaagatcataac 14980651  T
Q  101 atcatcaacaaatcagaatcataaattcggactcttcctattatg 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14980650 atcatcaacaaatcagaatcataaattcggactcttcctattatg 14980606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 367 - 444
Target Start/End: Complemental strand, 14989490 - 14989413
Alignment:
Q  367 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14989490 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 14989413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 219 - 291
Target Start/End: Complemental strand, 14980532 - 14980460
Alignment:
Q  219 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14980532 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 14980460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 369 - 444
Target Start/End: Complemental strand, 14980376 - 14980301
Alignment:
Q  369 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 444  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14980376 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatc 14980301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 367 - 404
Target Start/End: Complemental strand, 10906939 - 10906902
Alignment:
Q  367 ctcatcatcactaacatataaacattatcatttctcat 404  Q
    |||||||||||||| |||||||||||||||||||||||    
T  10906939 ctcatcatcactaaaatataaacattatcatttctcat 10906902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 28746 - 28602
Alignment:
Q  1 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||    
T  28746 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacgactttatatgcatgcatgagacagactcttcaagtattaaaagatcataac 28647  T
Q  101 atcatcaacaaatcagaatcataaattcggactcttcctattatg 145  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  28646 atcatcaacaaatcagaatcataaattcagactcttcctattatg 28602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 219 - 304
Target Start/End: Complemental strand, 28528 - 28443
Alignment:
Q  219 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 304  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28528 atgtatattagacaccatcattcaattcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 28443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 405
Target Start/End: Complemental strand, 28380 - 28342
Alignment:
Q  367 ctcatcatcactaacatataaacattatcatttctcatc 405  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  28380 ctcatcatcactaacatataaacatcatcatttctcatc 28342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 130420 - 130564
Alignment:
Q  1 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataac 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  130420 atgttattggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgcatgcatgagacagactcttcaagtattaaaagatcataac 130519  T
Q  101 atcatcaacaaatcagaatcataaattcggactcttcctattatg 145  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  130520 atcatcaacaaatcagaatcataaattcagactcttcctattatg 130564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 367 - 442
Target Start/End: Original strand, 130795 - 130870
Alignment:
Q  367 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtca 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  130795 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtca 130870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 219 - 291
Target Start/End: Original strand, 130623 - 130695
Alignment:
Q  219 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  130623 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 130695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 23658210 - 23658354
Alignment:
Q  1 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataac 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  23658210 atgttactggaatttcatcgtcatttcgtcatcatgattcctagactcgactctatatgcatgcatgagacagactcttcaagtattaaaagatcataac 23658309  T
Q  101 atcatcaacaaatcagaatcataaattcggactcttcctattatg 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  23658310 atcatcaacaaatcagaatcataaattcggactcttcctattatg 23658354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 17862520 - 17862398
Alignment:
Q  1 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataac 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| |||| ||||||||| ||||||| |||||    
T  17862520 atgttactggactttcgtcgtcatttcgtcatcatgattcctagacacaactttatatgcatgcatgagacagacttttcaagtatcaaaagattataac 17862421  T
Q  101 atcatcaacaaatcagaatcata 123  Q
    |||||||| |||||| |||||||    
T  17862420 atcatcaataaatcacaatcata 17862398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 23657638 - 23657707
Alignment:
Q  219 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatata 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23657638 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtctatatata 23657707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 23658413 - 23658482
Alignment:
Q  219 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatata 288  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  23658413 atgtatattagacaccatcattcaagtcatcatcataattataagtcgtcattctcatagtctatatata 23658482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 367 - 430
Target Start/End: Original strand, 23657751 - 23657814
Alignment:
Q  367 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatata 430  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23657751 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacatatatata 23657814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 23657512 - 23657564
Alignment:
Q  93 atcataacatcatcaacaaatcagaatcataaattcggactcttcctattatg 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23657512 atcataacatcatcaacaaatcagaatcataaattcggactcttcctattatg 23657564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 367 - 444
Target Start/End: Original strand, 23658526 - 23658611
Alignment:
Q  367 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattac--------atatatataatatcttcgtcatc 444  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||||||||||||||||||    
T  23658526 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacacacacatatatatataatatcttcgtcatc 23658611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 17862313 - 17862246
Alignment:
Q  219 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 286  Q
    |||||||||||||| |||||||||| |||||||||||||||||| |  |||||||||| |||||||||    
T  17862313 atgtatattagacatcatcattcaaatcatcatcataattataccttatcattctcatcgtcaatata 17862246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 4713284 - 4713140
Alignment:
Q  1 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  4713284 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgcatgcatgagacagactcttcaagtattaaaagatcataac 4713185  T
Q  101 atcatcaacaaatcagaatcataaattcggactcttcctattatg 145  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||    
T  4713184 atcatcaacaaatcagaatcataaattcagactcttcccattatg 4713140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 14055512 - 14055368
Alignment:
Q  1 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||     
T  14055512 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgcatgcatgagacagactcttcaagtattaaaagatcataaa 14055413  T
Q  101 atcatcaacaaatcagaatcataaattcggactcttcctattatg 145  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||    
T  14055412 atcatcaacaaataagaatcataaatgtggactcttcctattatg 14055368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 16614137 - 16614269
Alignment:
Q  1 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataac 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||    
T  16614137 atgttactgaactttcatcgtcatttcgtcatcatgattcctagacacgactctataagcatgcatgagacagactcttcaagtattaaaagatcataac 16614236  T
Q  101 atcatcaacaaatcagaatcataaattcggact 133  Q
    |||||||||||||||||||||||||||||||||    
T  16614237 atcatcaacaaatcagaatcataaattcggact 16614269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 14482070 - 14481926
Alignment:
Q  1 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| || ||||||||||||||||||||||||||||    
T  14482070 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacaactttatatgcatgcatgaaacagactcttcaagtattaaaagatcataac 14481971  T
Q  101 atcatcaacaaatcagaatcataaattcggactcttcctattatg 145  Q
    |||||||||||||||||||||||||| | |||||||||| |||||    
T  14481970 atcatcaacaaatcagaatcataaatgcagactcttcctgttatg 14481926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 370 - 444
Target Start/End: Original strand, 16642300 - 16642374
Alignment:
Q  370 atcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 444  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16642300 atcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 16642374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 219 - 291
Target Start/End: Original strand, 16642123 - 16642195
Alignment:
Q  219 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16642123 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 16642195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 369 - 444
Target Start/End: Complemental strand, 4712913 - 4712838
Alignment:
Q  369 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 444  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4712913 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatc 4712838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 367 - 444
Target Start/End: Complemental strand, 14055152 - 14055075
Alignment:
Q  367 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 444  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14055152 ctcattatcactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatc 14055075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 367 - 444
Target Start/End: Complemental strand, 14062893 - 14062816
Alignment:
Q  367 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 444  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14062893 ctcatcataactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatc 14062816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 219 - 291
Target Start/End: Complemental strand, 4713069 - 4712997
Alignment:
Q  219 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 291  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4713069 atgtatattagacaccatcattcaagttatcatcataattatacgtcgtcattctcatagtcaatatatatat 4712997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 14063049 - 14062983
Alignment:
Q  225 attagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 291  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  14063049 attagacaccatcattcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatatat 14062983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 219 - 291
Target Start/End: Complemental strand, 14055294 - 14055222
Alignment:
Q  219 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 291  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||    
T  14055294 atgtatattagacatcatcattcaagtcatcatcataattatacgtcatcattatcatcgtcaatatatatat 14055222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 13926960 - 13926896
Alignment:
Q  371 tcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatc 435  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  13926960 tcatcactaaaatataaacattatcatttctcatcgtatttatttatttaaatatatataatatc 13926896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 270
Target Start/End: Complemental strand, 14481851 - 14481800
Alignment:
Q  219 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcat 270  Q
    |||||||||||  | |||||||||| |||||||||||||||||| |||||||    
T  14481851 atgtatattaggaatcatcattcaaatcatcatcataattatacatcgtcat 14481800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 5e-66; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 16060146 - 16060289
Alignment:
Q  1 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataac 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  16060146 atgttactgaactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgcatgcatgagacagactcttcaagtattaaaagatcataac 16060245  T
Q  101 atcatcaacaaatcagaatcataaattcggactcttcctattat 144  Q
    || |||||||||||||||||||||||||||||||||||||||||    
T  16060246 atgatcaacaaatcagaatcataaattcggactcttcctattat 16060289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 48376424 - 48376568
Alignment:
Q  1 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||    
T  48376424 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgcatgcatgagacagactcttcaggtattaaaagatcataac 48376523  T
Q  101 atcatcaacaaatcagaatcataaattcggactcttcctattatg 145  Q
    ||| |||||||||||||||||||||||| ||||||||||||||||    
T  48376524 atcgtcaacaaatcagaatcataaattcagactcttcctattatg 48376568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 9079978 - 9080122
Alignment:
Q  1 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataac 100  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||    
T  9079978 atgttattggactttcatcgtcatttcgtcatcatgattcctcgacacgactctatatgcatgaatgagacagactcttcaagtattaaaagatcataac 9080077  T
Q  101 atcatcaacaaatcagaatcataaattcggactcttcctattatg 145  Q
    |||||||||||||||||||||||||| | ||||||||||||||||    
T  9080078 atcatcaacaaatcagaatcataaatgcagactcttcctattatg 9080122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 16069284 - 16069171
Alignment:
Q  13 tttcatcgtcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataacatcatcaacaaa 112  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  16069284 tttcatcgtcatttcgtcatcatgattcctagacacaactttatatgcatgcatgagacagactcttcaagtattaaaagatcataacatcatcaataaa 16069185  T
Q  113 tcagaatcataaat 126  Q
    | ||||||||||||    
T  16069184 ttagaatcataaat 16069171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 219 - 304
Target Start/End: Original strand, 16060364 - 16060449
Alignment:
Q  219 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16060364 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 16060449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 367 - 444
Target Start/End: Original strand, 16060512 - 16060589
Alignment:
Q  367 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 444  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16060512 ctcatcatcactaacatataaacattatcatttctcatcatatttatttaattacatatatataatatcttcgtcatc 16060589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 367 - 444
Target Start/End: Original strand, 48376787 - 48376864
Alignment:
Q  367 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 444  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48376787 ctcatcatcaataacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 48376864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 219 - 291
Target Start/End: Original strand, 9080196 - 9080268
Alignment:
Q  219 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  9080196 atgtatattagacaccatcattcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatatat 9080268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 219 - 284
Target Start/End: Original strand, 48376627 - 48376692
Alignment:
Q  219 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaata 284  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  48376627 atgtatattagacaccatcatttaagtcatcatcataattatacgtcatcattctcatagtcaata 48376692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 16069077 - 16069010
Alignment:
Q  219 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 286  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||| |||||||||    
T  16069077 atgtatattagacatcatcattcaaatcatcatcataattatacgtcatcattctcatcgtcaatata 16069010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 367 - 435
Target Start/End: Complemental strand, 4531865 - 4531797
Alignment:
Q  367 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatc 435  Q
    |||||||||| ||| |||||| |||||| ||||||||| ||||||||||| ||||||||||||||||||    
T  4531865 ctcatcatcaataaaatataagcattattatttctcattgtatttatttatttacatatatataatatc 4531797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 6899711 - 6899608
Alignment:
Q  42 tagacacgactctatatgaatgcatgag-acggactcttcaagtattaaaagatcataacatcatcaacaaatcagaatcataaattcggactcttccta 140  Q
    |||||||||||||||||| ||||||||| ||  |||| ||||||||||||  |||||||||||| |||||| ||| |||||| ||| |  ||||||||||    
T  6899711 tagacacgactctatatgcatgcatgaggacaaactcatcaagtattaaat-atcataacatcaccaacaattcataatcatcaatgcaaactcttccta 6899613  T
Q  141 ttatg 145  Q
    |||||    
T  6899612 ttatg 6899608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 404
Target Start/End: Original strand, 9080338 - 9080375
Alignment:
Q  367 ctcatcatcactaacatataaacattatcatttctcat 404  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9080338 ctcatcatcactaacatataaacattatcatttctcat 9080375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 428
Target Start/End: Complemental strand, 37945924 - 37945878
Alignment:
Q  382 atataaacattatcatttctcatcgtatttatttaattacatatata 428  Q
    ||||||||||  |||||||| |||||||||||||| |||||||||||    
T  37945924 atataaacatcgtcatttcttatcgtatttatttatttacatatata 37945878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 41744134 - 41744175
Alignment:
Q  245 tcatcatcataattatacgtcgtcattctcatagtcaatata 286  Q
    ||||||||||||||| ||||||||||||||||  ||||||||    
T  41744134 tcatcatcataattagacgtcgtcattctcatcatcaatata 41744175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 399
Target Start/End: Complemental strand, 37946064 - 37946032
Alignment:
Q  367 ctcatcatcactaacatataaacattatcattt 399  Q
    |||||||||||||| ||||||||||||||||||    
T  37946064 ctcatcatcactaaaatataaacattatcattt 37946032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 126; Significance: 8e-65; HSPs: 5)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 4 - 145
Target Start/End: Original strand, 28692 - 28833
Alignment:
Q  4 ttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataacatc 103  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||    
T  28692 ttactggactttcatcgtcatttcatcatcatgattcctagacacgactctacatgcatgcatgagacagactcttcaagtattaaaagatcataacatc 28791  T
Q  104 atcaacaaatcagaatcataaattcggactcttcctattatg 145  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  28792 atcaacaaatcagaatcataaattcggactcttcctattatg 28833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 4 - 145
Target Start/End: Original strand, 24495 - 24636
Alignment:
Q  4 ttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataacatc 103  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||    
T  24495 ttactggactttcatcgtcatttcatcatcatgattcctagacacgactctacatgcatgcatgagacagactcttcaagtattaaaagatcataacatc 24594  T
Q  104 atcaacaaatcagaatcataaattcggactcttcctattatg 145  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  24595 atcaacaaaacaaaatcataaattcggactcttcctattatg 24636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 367 - 444
Target Start/End: Original strand, 29057 - 29134
Alignment:
Q  367 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29057 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 29134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 219 - 304
Target Start/End: Original strand, 28907 - 28994
Alignment:
Q  219 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtca--atatatatatttacacaccaccc 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  28907 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatatttacacaccaccc 28994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 219 - 291
Target Start/End: Original strand, 24710 - 24782
Alignment:
Q  219 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24710 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 24782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0239 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 21626 - 21482
Alignment:
Q  1 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataac 100  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  21626 atgtaactggactttcttcgtcatttcgtcatcatgattcctagacacgactctatatgcatgcatgagacagactcttcaagtattaaaagatcataac 21527  T
Q  101 atcatcaacaaatcagaatcataaattcggactcttcctattatg 145  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  21526 atcataaacaaatcagaatcataaattcggactcttcctattatg 21482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 14009 - 14153
Alignment:
Q  1 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataac 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  14009 atgttactgaactttcatcgtcatttcgtcatcatgattcctaaacacgactctatatgcatgcatgagacagactcttcaagtattaaaagatcataac 14108  T
Q  101 atcatcaacaaatcagaatcataaattcggactcttcctattatg 145  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  14109 atcatcaacaaattagaatcataaattcggactcttcctattatg 14153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 368 - 444
Target Start/End: Original strand, 14378 - 14454
Alignment:
Q  368 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 444  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14378 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 14454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 219 - 299
Target Start/End: Original strand, 14227 - 14307
Alignment:
Q  219 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacac 299  Q
    |||||||||||||||||||||  |||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  14227 atgtatattagacaccatcatataagtcatcatcataattatacgtcatcattgtcatagtcaatatatatatatacacac 14307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 121; Significance: 8e-62; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 18389 - 18245
Alignment:
Q  1 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| || | ||| |||||| ||||||||||| ||||||||||||||||||||||||||||    
T  18389 atgttactggactttcatcgtcatttcgtcatcatgattcctatactctactttatatgcatgcatgagacagactcttcaagtattaaaagatcataac 18290  T
Q  101 atcatcaacaaatcagaatcataaattcggactcttcctattatg 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  18289 atcatcaacaaatcagaatcataaattcggactcttcctattatg 18245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 219 - 291
Target Start/End: Complemental strand, 18171 - 18099
Alignment:
Q  219 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 291  Q
    |||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  18171 atgtatattagataccatcattcaagtcatcatcataatcatacttcgtcattctcatagtcaatatatatat 18099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 8e-62; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 13882754 - 13882610
Alignment:
Q  1 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataac 100  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||    
T  13882754 atgttattggactttcatcgtcatttcatcatcatgattcctagacacgactatatatgcatgcatgagacagactcttcaagtattaaaagatcataac 13882655  T
Q  101 atcatcaacaaatcagaatcataaattcggactcttcctattatg 145  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  13882654 atcatcaacaaatcagaatcataaattcggactctttctattatg 13882610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 51659143 - 51658999
Alignment:
Q  1 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataac 100  Q
    |||| ||| |||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||    
T  51659143 atgtcactagactttcatcgtcatttcatcatcatgattcctagacacgactatatatgcatgcatgagacagactcttcaagtattaaaagatcataac 51659044  T
Q  101 atcatcaacaaatcagaatcataaattcggactcttcctattatg 145  Q
    |||||||||||||||||||||||||| || ||||||||| |||||    
T  51659043 atcatcaacaaatcagaatcataaatgcgaactcttcctgttatg 51658999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 367 - 444
Target Start/End: Complemental strand, 13882351 - 13882274
Alignment:
Q  367 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13882351 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 13882274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 367 - 444
Target Start/End: Complemental strand, 51658777 - 51658700
Alignment:
Q  367 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 444  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51658777 ctcatcatcactaacatataaatattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 51658700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 219 - 291
Target Start/End: Complemental strand, 13882536 - 13882464
Alignment:
Q  219 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  13882536 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcattgtctatatatatat 13882464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 219 - 290
Target Start/End: Complemental strand, 51658925 - 51658854
Alignment:
Q  219 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatata 290  Q
    |||||||||||| | |||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  51658925 atgtatattagatatcatcgttcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatata 51658854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 382 - 435
Target Start/End: Complemental strand, 1567166 - 1567113
Alignment:
Q  382 atataaacattatcatttctcatcgtatttatttaattacatatatataatatc 435  Q
    ||||||| ||| ||||||||||||||||||||||  ||||||||||||||||||    
T  1567166 atataaatattgtcatttctcatcgtatttatttgtttacatatatataatatc 1567113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 24832485 - 24832341
Alignment:
Q  1 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  24832485 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacaactctatatgcatgcatgagacagactcttcaagtattaaaagatcataac 24832386  T
Q  101 atcatcaacaaatcagaatcataaattcggactcttcctattatg 145  Q
    ||||||||||||||| |||||||||| | |||||||||| |||||    
T  24832385 atcatcaacaaatcaaaatcataaatgcagactcttcctgttatg 24832341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 224 - 286
Target Start/End: Complemental strand, 25756845 - 25756783
Alignment:
Q  224 tattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 286  Q
    |||| |||| |||||||||| ||||||||||||||||| ||| |||||||||| |||||||||    
T  25756845 tatttgacatcatcattcaaatcatcatcataattataagtcatcattctcatcgtcaatata 25756783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 224 - 286
Target Start/End: Original strand, 25790956 - 25791018
Alignment:
Q  224 tattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 286  Q
    |||| |||| |||||||||| ||||||||||||||||| ||| |||||||||| |||||||||    
T  25790956 tattcgacatcatcattcaaatcatcatcataattataagtcatcattctcatcgtcaatata 25791018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 276
Target Start/End: Complemental strand, 24832266 - 24832209
Alignment:
Q  219 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcat 276  Q
    |||||||||||  | |||||||||| |||||||||||||||||| || ||||||||||    
T  24832266 atgtatattaggaatcatcattcaaatcatcatcataattatacatcatcattctcat 24832209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 17418392 - 17418536
Alignment:
Q  1 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||  ||||||||||||||||||||||||||||    
T  17418392 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacaactctatatgcatgcatgagatagactcttcaagtattaaaagatcataac 17418491  T
Q  101 atcatcaacaaatcagaatcataaattcggactcttcctattatg 145  Q
    |||| ||||||||||||||||||||| | ||||||||||||||||    
T  17418492 atcaccaacaaatcagaatcataaatgcagactcttcctattatg 17418536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 19728721 - 19728577
Alignment:
Q  1 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||  ||| ||||||||| |||| ||||||||    
T  19728721 atgttactggactttcatcgtcatttcgtcatcatgattcctagacatgactctatatgcatgcaagagacaaacttttcaagtatcaaaatatcataac 19728622  T
Q  101 atcatcaacaaatcagaatcataaattcggactcttcctattatg 145  Q
    ||| ||||||||||||||||||||||   ||||| ||||||||||    
T  19728621 atcctcaacaaatcagaatcataaatgtagactcctcctattatg 19728577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 19728514 - 19728447
Alignment:
Q  219 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 286  Q
    |||||||||||||| |||||||||| |||||||||||||||||| |  |||||||||| || ||||||    
T  19728514 atgtatattagacatcatcattcaaatcatcatcataattatactttatcattctcatcgttaatata 19728447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 1701 - 1557
Alignment:
Q  1 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||| |||||||||||||    
T  1701 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacaactctatatgcatgcatgagacggacttttcaagtatcaaaagatcataac 1602  T
Q  101 atcatcaacaaatcagaatcataaattcggactcttcctattatg 145  Q
    ||||||||||||||||||||||||||   ||||| ||||||||||    
T  1601 atcatcaacaaatcagaatcataaatgtagactcctcctattatg 1557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 1494 - 1427
Alignment:
Q  219 atgtatattagacaccatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 286  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||  |||||||||| |||||||||    
T  1494 atgtatattagacatcatcattcaaatcatcatcataattatacgttatcattctcatcgtcaatata 1427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 142028 - 142167
Alignment:
Q  4 ttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataacatc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||  ||| ||||||||||||||||||||||||||    
T  142028 ttactggactttcatcgtcatttcgtcatcatgattcctagacacaactctatatgcatgcatgagacaaacttttcaagtattaaaagatcataacatc 142127  T
Q  104 atcaacaaatcagaatcataaattcggactcttcctatta 143  Q
    |||||||||||||||||||||||   ||||| ||||||||    
T  142128 atcaacaaatcagaatcataaatgtagactcctcctatta 142167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 17019 - 17164
Alignment:
Q  3 gttactggactttcatcg---tcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataa 99  Q
    ||||||||||||||||||   ||||||||||||||||||||||| |||| |||||||||| ||||||||||  ||||||||||||||||||| |||||||    
T  17019 gttactggactttcatcgacgtcatttcgtcatcatgattcctaaacacaactctatatgtatgcatgagagagactcttcaagtattaaaatatcataa 17118  T
Q  100 catcatcaacaaatcagaatcataaattcggactcttcctattatg 145  Q
    |||||||||||||||||||||||| || | ||||||||||||||||    
T  17119 catcatcaacaaatcagaatcatagatgcagactcttcctattatg 17164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 23907557 - 23907702
Alignment:
Q  3 gttactggactttcatcg---tcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataa 99  Q
    ||||||||||||||||||   ||||||||||||||||||||||| |||| |||||||||| ||| ||||||  ||||||||||||||||||| |||||||    
T  23907557 gttactggactttcatcgatgtcatttcgtcatcatgattcctaaacacaactctatatgcatgtatgagagagactcttcaagtattaaaatatcataa 23907656  T
Q  100 catcatcaacaaatcagaatcataaattcggactcttcctattatg 145  Q
    |||||||||||||||| |||||||||| | ||||||||||||||||    
T  23907657 catcatcaacaaatcaaaatcataaatgcagactcttcctattatg 23907702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 23247511 - 23247367
Alignment:
Q  1 atgttactggactttcatcgtcatttcgtcatcatgattcctagacacgactctatatgaatgcatgagacggactcttcaagtattaaaagatcataac 100  Q
    ||||||||| |||||||||| |||||| ||||||| |||||||||| | |||||||||| ||||||||||| |||||||||||||||||||||| |||||    
T  23247511 atgttactgaactttcatcggcatttcttcatcataattcctagacccaactctatatgcatgcatgagacagactcttcaagtattaaaagattataac 23247412  T
Q  101 atcatcaacaaatcagaatcataaattcggactcttcctattatg 145  Q
    |||| |||||||||| |||||||||| | |||||||| |||||||    
T  23247411 atcaccaacaaatcaaaatcataaatgcagactcttcttattatg 23247367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 367 - 435
Target Start/End: Complemental strand, 23656576 - 23656508
Alignment:
Q  367 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatc 435  Q
    ||||| |||| ||| ||||||| ||||||||||||||| ||||||||||| || |||||||||||||||    
T  23656576 ctcattatcattaaaatataaatattatcatttctcattgtatttatttactttcatatatataatatc 23656508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 22521465 - 22521533
Alignment:
Q  1 atgttactggacttt-catcgtcatttcgtcatcatgattcctagacacgactctatatgaatgcatga 68  Q
    ||||||||||||||| |||||||||||| ||  ||| ||||||||||| ||||||||||  ||||||||    
T  22521465 atgttactggacttttcatcgtcatttcatctacataattcctagacatgactctatattcatgcatga 22521533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 390 - 444
Target Start/End: Original strand, 1 - 55
Alignment:
Q  390 attatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatc 444  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1 attatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatc 55  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 444
Target Start/End: Complemental strand, 13639 - 13608
Alignment:
Q  413 tttaattacatatatataatatcttcgtcatc 444  Q
    ||||||||||||||||||||||||||||||||    
T  13639 tttaattacatatatataatatcttcgtcatc 13608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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