View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0755_high_28 (Length: 337)
Name: NF0755_high_28
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 45 - 312
Target Start/End: Original strand, 18013797 - 18014062
Alignment:
| Q |
45 |
acaagatgtcttctttcaaactcaattggtatatcactcaaaaaggagtttcttagctcatgatataaaggttctattgtgactgatgcagagtaatttg |
144 |
Q |
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| T |
18013797 |
acaagatatcttctttcaaactcaattggtat--cattcaaaaaggagtttcttagctcatgatataaaggttctattgtgactgatgcagagtaatttg |
18013894 |
T |
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| Q |
145 |
taaaacataacaatccacttcataatatcacaaaataatgttaaagtaatataaaatttcacaactttcgagtatcataaaactataagctaactttcca |
244 |
Q |
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| T |
18013895 |
taaaacataacaatccacttcataatatcacaaaataatgttaaagtaatataaaattacacaacttttgagtatcataaaactataagctaactttcca |
18013994 |
T |
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| Q |
245 |
atgcaactggcttcactcataaatgagttatatagctcaagctataagaatttcatttcggctgtgtc |
312 |
Q |
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| T |
18013995 |
atgcaactggcttcgctcatatatgagttatatagctcaagttataagaattttattccggctatgtc |
18014062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 49 - 232
Target Start/End: Original strand, 31908914 - 31909094
Alignment:
| Q |
49 |
gatgtcttctttcaaactcaattggtatatcactcaaaaaggagtttcttagctcatgatataaaggttctattgtgactgatgcagagtaatttgtaaa |
148 |
Q |
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||||||| |||||||| |||||||| | |||||||||||||||| || | |||| |||| | |||||||||||||||||||||| | ||| ||| ||| |
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| T |
31908914 |
gatgtctgttttcaaacacaattggttt--cactcaaaaaggagttact-atctcaagatacagaggttctattgtgactgatgcacattaacttgcaaa |
31909010 |
T |
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| Q |
149 |
acataacaatccacttcataatatcacaaaataatgttaaagtaatataaaatttcacaactttcgagtatcataaaactataa |
232 |
Q |
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| T |
31909011 |
acagaacaattcatttcataatgttacgaaataatgtacaaataatataaaattacacaactttcaagtatcataatactataa |
31909094 |
T |
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