View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0755_high_34 (Length: 322)

Name: NF0755_high_34
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0755_high_34
NF0755_high_34
[»] chr3 (2 HSPs)
chr3 (11-300)||(16859353-16859642)
chr3 (11-94)||(36100162-36100242)
[»] chr4 (2 HSPs)
chr4 (11-291)||(14198974-14199252)
chr4 (214-266)||(36040229-36040281)
[»] chr7 (3 HSPs)
chr7 (11-249)||(46742109-46742347)
chr7 (214-284)||(46372643-46372713)
chr7 (235-286)||(29054370-29054421)
[»] chr8 (2 HSPs)
chr8 (214-286)||(37742525-37742597)
chr8 (214-286)||(44842827-44842899)
[»] chr5 (2 HSPs)
chr5 (214-286)||(20407144-20407216)
chr5 (214-286)||(34985448-34985520)
[»] chr2 (1 HSPs)
chr2 (214-286)||(13098790-13098862)
[»] chr1 (6 HSPs)
chr1 (214-286)||(11166392-11166464)
chr1 (214-286)||(41768344-41768416)
chr1 (214-286)||(50986105-50986177)
chr1 (214-284)||(4296731-4296801)
chr1 (214-280)||(37382116-37382182)
chr1 (183-256)||(30217215-30217288)
[»] chr6 (1 HSPs)
chr6 (214-268)||(27830956-27831010)


Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 16859353 - 16859642
Alignment:
Q  11 cacagacaggtaaaataatttcttttcatctttacaaaaccatgaaaatgatcattaaactcattatttctttaattttttatcttcattttattgttga 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16859353 cacagacaggtaaaataatttcttttcatctttacaaaaccatgaaaatgatcattaaactcattatttctttaattttttatcttcattttattgttga 16859452  T
Q  111 gcttcatatgacatatttaacaaactatagaatcttcaacatcacatatgaggcaaaacaagaaaatgtataaagatgagaagttaaagaaagaatacat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16859453 gcttcatatgacatatttaacaaactatagaatcttcaacatcacatatgaggcaaaacaagaaaatgtataaagatgagaagtaaaagaaagaatacat 16859552  T
Q  211 atccaaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattagaaaatgctgatgat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16859553 atccaaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattagaaaatgctgatgat 16859642  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 36100242 - 36100162
Alignment:
Q  11 cacagacaggtaaaataatttcttttcatctttacaaaaccatgaaaatgatcattaaactcattatttctttaattttttatc 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||    
T  36100242 cacagacaggtaaaataatttcttttcatctttacaaaaccatgaaaatgatcattaaactc---atttctttaattttttatc 36100162  T

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Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 14198974 - 14199252
Alignment:
Q  11 cacagacaggtaaaataatttcttttcatctttacaaaaccatgaaaatgatcattaaactcattatttctttaattttttatcttcattttattgttga 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14198974 cacagacaggtaaaataatttcttttcatctttacaaaaccatgaaaatgatcattaaactcattatttctttaatttttcatcttcattttattgttga 14199073  T
Q  111 gcttcatatgacatatttaacaaactatagaatcttcaacatcacatatgaggcaaaacaagaaaatgtataaagatgagaagttaaagaaagaatacat 210  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14199074 gcttcatatgacat--ttaacaaactatagaatcttcaacatcacatatgaggcaaaacaagaaaatgtataaagatgagaagtaaaagaaagaatacat 14199171  T
Q  211 atccaaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattagaaaat 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14199172 atccaaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattagaaaat 14199252  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 36040281 - 36040229
Alignment:
Q  214 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaat 266  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36040281 caaaaacagtcctaacacaattttaaaattatatcaacaacaaaaaagcaaat 36040229  T

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Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 46742347 - 46742109
Alignment:
Q  11 cacagacaggtaaaataatttcttttcatctttacaaaaccatgaaaatgatcattaaactcattatttctttaattttttatcttcattttattgttga 110  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46742347 cacagacaggtaaaataatttcttttcatctttacaaaatcatgaaaatgatcattaaactcattatttctttaattttttatcttcattttattgttga 46742248  T
Q  111 gcttcatatgacatatttaacaaactatagaatcttcaacatcacatatgaggcaaaacaagaaaatgtataaagatgagaagttaaagaaagaatacat 210  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  46742247 gcttcatatgacatatttaacaaactacagaatcttcaacatcacatatgaggcaaaacaagaaaatgtataaagatgagaagttaaagaaataatacat 46742148  T
Q  211 atccaaaaacagtcctaacacaattttacaattatatca 249  Q
    |||||||||||||||||||||||||||||||||||||||    
T  46742147 atccaaaaacagtcctaacacaattttacaattatatca 46742109  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 46372713 - 46372643
Alignment:
Q  214 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcatt 284  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  46372713 caaaaacagtcctaacacaattttataattatatcaacaacaaaaaagcaaatatacaaaatatattcatt 46372643  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 29054421 - 29054370
Alignment:
Q  235 tttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 286  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29054421 tttataattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 29054370  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 37742525 - 37742597
Alignment:
Q  214 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37742525 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 37742597  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 44842899 - 44842827
Alignment:
Q  214 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 286  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44842899 caaaaacagtcctaacacaattttaaaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 44842827  T

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Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 20407216 - 20407144
Alignment:
Q  214 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 286  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20407216 caaaaacagtcctaacacaattttaaaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 20407144  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 34985448 - 34985520
Alignment:
Q  214 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 286  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34985448 caaaaacagtcttaacacaattttaaaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 34985520  T

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Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 13098790 - 13098862
Alignment:
Q  214 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 286  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13098790 caaaaacagtcctaacacaattttaaaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 13098862  T

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Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 11166464 - 11166392
Alignment:
Q  214 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 286  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11166464 caaaaacagtcctaacacaattttacaattatatcaacaaaaaaaaagcaaatatacaaaatatattcattag 11166392  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 41768344 - 41768416
Alignment:
Q  214 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 286  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41768344 caaaaacagtcctaacacaattttaaaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 41768416  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 50986105 - 50986177
Alignment:
Q  214 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 286  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50986105 caaaaacagtcctaacacaattttaaaattatatcaacaacaaaaaagcaaatatacaaaatatattcattag 50986177  T

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Target: chr1; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 4296801 - 4296731
Alignment:
Q  214 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatattcatt 284  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4296801 caaaaacagtcctaacacaattttaaaattatatcaacaacaaaaaagcaaatatacaaaatatattcatt 4296731  T

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Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 37382116 - 37382182
Alignment:
Q  214 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatatacaaaatatatt 280  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37382116 caaaaacagtcctaacacaattttaaaattatatcaacaacaaaaaagcaaatatacaaaatatatt 37382182  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 30217215 - 30217288
Alignment:
Q  183 aagatgagaagttaaagaaagaatacatatccaaaaacagtcctaacacaattttacaattatatcaacaacaa 256  Q
    |||||||| ||||| ||| | |||||||||||||| |||||||||||| |||||||||||||| || |||||||    
T  30217215 aagatgagtagttagagagaaaatacatatccaaacacagtcctaacataattttacaattatctctacaacaa 30217288  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 27831010 - 27830956
Alignment:
Q  214 caaaaacagtcctaacacaattttacaattatatcaacaacaaaaaagcaaatat 268  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27831010 caaaaacagtcctaacacaattttaaaattatatcaacaacaaaaaagcaaatat 27830956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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