View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0755_high_4 (Length: 482)
Name: NF0755_high_4
Description: NF0755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0755_high_4 |
 | |
|
| [»] scaffold0638 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0638 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 11 - 462
Target Start/End: Original strand, 2181 - 2631
Alignment:
| Q |
11 |
cacagaagtaagatgtgacatgaaccaaacacgacaacatagctaagtgccaacgactcccccatgctttacctttaaaatgaagataaatgatttcatt |
110 |
Q |
| |
|
||||| ||||||| | |||| |||||||| |||||||||||||||| |||||||||||||| ||||||||||| |||| ||||||||||||||||| |
|
|
| T |
2181 |
cacagtagtaagacgcgacacaaaccaaacgggacaacatagctaagtaccaacgactcccccggactttacctttataatggagataaatgatttcatt |
2280 |
T |
|
| Q |
111 |
atcaacccgcaactatgacaggatcatcttgaatccacccgaaataataacactataaatatacctttgcatattaataaaatgagcgacttttgctcgc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2281 |
atcaacccgcaactatgacaggatcatcttgaatccacccgaaataataacactataaatatacctttgcatattaataaaatgagcgacttttgctcgc |
2380 |
T |
|
| Q |
211 |
aactctgtttgtatgttaaatgttagaccagcagggacatggacaccaagcgtgtcggagcatgcaatggtgaacggttgtaacgacttctgctttttaa |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
2381 |
aactctgtttgtatgttaaatgtttgaccagcagggacagggacaccaagtgtgtcggagcatgcaatggtgaacggatgtaacgacttctg-attttaa |
2479 |
T |
|
| Q |
311 |
gtggaacaaaagcctaaacaaccgtggtagacccacctgggggccaaccacttatcaggacaagtgtctcaccccctaaagctcgttaaaggggggacta |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||| |||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
2480 |
gtggaacaaaagcctaaacaaccgtggtagacccacctgggggctagccatttatcaggacgagtgtctcgccccctaaagcccgttaaaggggggacta |
2579 |
T |
|
| Q |
411 |
aaccttggccatgaagcccacacagttttactatatatgtttttgatgatgt |
462 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2580 |
aaccttggccgtgaagcccacacagttttactatatatgtttttgatgatgt |
2631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 464
Target Start/End: Original strand, 13904268 - 13904309
Alignment:
| Q |
423 |
gaagcccacacagttttactatatatgtttttgatgatgtcc |
464 |
Q |
| |
|
|||||| |||| |||||||| ||||||||||||||||||||| |
|
|
| T |
13904268 |
gaagcctacactgttttactttatatgtttttgatgatgtcc |
13904309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4799 times since January 2019
Visitors: 4839